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龙胆科(Gentianaceae)植物的完整叶绿体基因组及其系统发育分析。

The complete chloroplast genome of (gentianaceae) and its phylogenetic analysis.

作者信息

Zhang Zhishi, Deng Yongbiao, Wu Lan, Zhu Haoren, Song Yulong, He Aotian, Dai Jian, Qin Jinhui, Luo Lihuan, Xiong Chao

机构信息

School of Life Science and Technology, Wuhan Polytechnic University, Wuhan, China.

Department of Pharmacognosy, Pharmacy School, Guilin Medical University, Guilin, China.

出版信息

Mitochondrial DNA B Resour. 2024 Aug 13;9(8):1072-1076. doi: 10.1080/23802359.2024.2391089. eCollection 2024.

DOI:10.1080/23802359.2024.2391089
PMID:39155915
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11328818/
Abstract

To elucidate the genetic information and evolutionary relationships of , we initiated the sequencing of the complete chloroplast genome of Franch. 1888, complemented by comparative analyses with closely related species. The chloroplast genome of was 153,516 bp in length and exhibited a typical quadripartite structure. It contained two regions with Inverted Repeat lengths of 25,767 bp, located between one Large Single-Copy region (83,617 bp) and one Short Single-Copy region (18,365 bp). The chloroplast genome of encoded 132 genes, including 87 protein-coding genes, 37 transfer RNA genes, and 8 ribosomal RNA genes. The overall GC content was 38.15%. Maximum likelihood phylogenetic analysis of based on 26 available plastomes showed a close relationship between and . This study will contribute to the genetic preservation of the species and the phylogenetic study of .

摘要

为了阐明[物种名称]的遗传信息和进化关系,我们启动了对1888年发表的[物种名称]Franch.完整叶绿体基因组的测序,并辅以与近缘物种的比较分析。[物种名称]的叶绿体基因组长度为153,516 bp,呈现典型的四分体结构。它包含两个反向重复长度为25,767 bp的区域,位于一个大单拷贝区域(83,617 bp)和一个小单拷贝区域(18,365 bp)之间。[物种名称]的叶绿体基因组编码132个基因,包括87个蛋白质编码基因、37个转运RNA基因和8个核糖体RNA基因。总体GC含量为38.15%。基于26个可用质体基因组对[物种名称]进行的最大似然系统发育分析表明,[物种名称]与[另一物种名称]关系密切。本研究将有助于该物种的遗传保护以及[物种名称]的系统发育研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3a2/11328818/2aacd421caeb/TMDN_A_2391089_F0003_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3a2/11328818/38b30be89d6f/TMDN_A_2391089_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3a2/11328818/ce8f49f81b9c/TMDN_A_2391089_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3a2/11328818/2aacd421caeb/TMDN_A_2391089_F0003_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3a2/11328818/38b30be89d6f/TMDN_A_2391089_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3a2/11328818/ce8f49f81b9c/TMDN_A_2391089_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3a2/11328818/2aacd421caeb/TMDN_A_2391089_F0003_C.jpg

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Mitochondrial DNA B Resour. 2023 Oct 23;8(10):1132-1136. doi: 10.1080/23802359.2023.2270211. eCollection 2023.
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The complete plastome of subsp. (Hoffmanns. & Link) M.Laínz (Gentianaceae), the first chloroplast genome belonging to the genus.
亚种(霍夫曼斯和林克)M. 莱因兹(龙胆科)的完整质体基因组,这是该属的首个叶绿体基因组。
Mitochondrial DNA B Resour. 2023 Jan 9;8(1):86-90. doi: 10.1080/23802359.2022.2160670. eCollection 2023.
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CPGView: A package for visualizing detailed chloroplast genome structures.CPGView:一个用于可视化详细叶绿体基因组结构的软件包。
Mol Ecol Resour. 2023 Apr;23(3):694-704. doi: 10.1111/1755-0998.13729. Epub 2023 Jan 1.
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Comparative chloroplast genome analyses of (Gesneriaceae): Insights into adaptive evolution and phylogenetic analysis.苦苣苔科(Gesneriaceae)叶绿体基因组比较分析:对适应性进化和系统发育分析的见解
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