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探索人类-猴痘病毒相互作用组:HuPoxNET图谱揭示功能见解。

Navigating the human-monkeypox virus interactome: HuPoxNET atlas reveals functional insights.

作者信息

Kataria Raghav, Duhan Naveen, Kaundal Rakesh

机构信息

Department of Plants, Soils, and Climate, College of Agriculture and Applied Sciences, Logan, UT, United States.

Bioinformatics Facility, Center for Integrated BioSystems, Logan, UT, United States.

出版信息

Front Microbiol. 2024 Aug 2;15:1399555. doi: 10.3389/fmicb.2024.1399555. eCollection 2024.

DOI:10.3389/fmicb.2024.1399555
PMID:39155985
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11327128/
Abstract

Monkeypox virus, a close relative of variola virus, has significantly increased the incidence of monkeypox disease in humans, with several clinical symptoms. The sporadic spread of the disease outbreaks has resulted in the need for a comprehensive understanding of the molecular mechanisms underlying disease infection and potential therapeutic targets. Protein-protein interactions play a crucial role in various cellular processes and regulate different immune signals during virus infection. Computational algorithms have gained high significance in the prediction of potential protein interaction pairs. Here, we developed a comprehensive database called HuPoxNET (https://kaabil.net/hupoxnet/) using the state-of-the-art MERN stack technology. The database leverages two sequence-based computational models to predict strain-specific protein-protein interactions between human and monkeypox virus proteins. Furthermore, various protein annotations of the human and viral proteins such as gene ontology, KEGG pathways, subcellular localization, protein domains, and novel drug targets identified from our study are also available on the database. HuPoxNET is a user-friendly platform for the scientific community to gain more insights into the monkeypox disease infection and aid in the development of therapeutic drugs against the disease.

摘要

猴痘病毒是天花病毒的近亲,已显著增加了人类猴痘疾病的发病率,并伴有多种临床症状。疾病爆发的零星传播导致需要全面了解疾病感染背后的分子机制和潜在治疗靶点。蛋白质-蛋白质相互作用在各种细胞过程中起着关键作用,并在病毒感染期间调节不同的免疫信号。计算算法在预测潜在蛋白质相互作用对方面具有重要意义。在此,我们使用最先进的MERN堆栈技术开发了一个名为HuPoxNET(https://kaabil.net/hupoxnet/)的综合数据库。该数据库利用两种基于序列的计算模型来预测人类和猴痘病毒蛋白之间的菌株特异性蛋白质-蛋白质相互作用。此外,数据库中还提供了人类和病毒蛋白的各种蛋白质注释,如基因本体、KEGG通路、亚细胞定位、蛋白质结构域以及我们研究中确定的新型药物靶点。HuPoxNET是一个用户友好的平台,供科学界更深入地了解猴痘疾病感染,并有助于开发针对该疾病的治疗药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/10fa7de947c6/fmicb-15-1399555-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/2a218d6998bc/fmicb-15-1399555-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/f730610c127a/fmicb-15-1399555-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/c0d1c99e44f4/fmicb-15-1399555-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/fc3ecc037118/fmicb-15-1399555-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/10fa7de947c6/fmicb-15-1399555-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/2a218d6998bc/fmicb-15-1399555-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/f730610c127a/fmicb-15-1399555-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/c0d1c99e44f4/fmicb-15-1399555-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/fc3ecc037118/fmicb-15-1399555-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c1/11327128/10fa7de947c6/fmicb-15-1399555-g005.jpg

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本文引用的文献

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2
Evaluation of Monkeypox- and Vaccinia virus-neutralizing antibodies in human serum samples after vaccination and natural infection.评估人类血清样本中接种疫苗和自然感染后猴痘病毒和牛痘病毒中和抗体。
Front Public Health. 2023 Jun 21;11:1195674. doi: 10.3389/fpubh.2023.1195674. eCollection 2023.
3
Identification of FDA-approved drugs with triple targeting mode of action for the treatment of monkeypox: a high throughput virtual screening study.
鉴定具有三重作用机制的 FDA 批准药物用于治疗猴痘:高通量虚拟筛选研究。
Mol Divers. 2024 Jun;28(3):1093-1107. doi: 10.1007/s11030-023-10636-4. Epub 2023 Apr 20.
4
Deciphering the complete human-monkeypox virus interactome: Identifying immune responses and potential drug targets.解析完整的人-猴痘病毒互作组:鉴定免疫反应和潜在的药物靶标。
Front Immunol. 2023 Mar 27;14:1116988. doi: 10.3389/fimmu.2023.1116988. eCollection 2023.
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Antiviral Treatment against Monkeypox: A Scoping Review.抗猴痘病毒治疗:一项范围综述
Trop Med Infect Dis. 2022 Nov 10;7(11):369. doi: 10.3390/tropicalmed7110369.
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Tecovirimat is effective against human monkeypox virus in vitro at nanomolar concentrations.替考韦瑞玛在体外对人猴痘病毒具有纳摩尔浓度的有效性。
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