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LEU18496 的测序、组装和基因组注释,这是一个担子菌类互惠共生种。

Sequencing, assembly, and genomic annotation of LEU18496, a dikarya mutualistic species.

机构信息

Posgrado en Ciencias Naturales e Ingeniería, Universidad Autónoma Metropolitana, Unidad Cuajimalpa, Vasco de Quiroga 4871, Cuajimalpa, 05348 Ciudad de México, Mexico.

Department of Biology, University of New Brunswick 10 Bailey Drive, Fredericton, New Brunswick E3B 5A3, Canada.

出版信息

Mol Omics. 2024 Sep 23;20(8):524-531. doi: 10.1039/d4mo00108g.

Abstract

The basidiomycete fungus is able to grow in the fungus garden of leaf-cutter ants. This mutualistic interaction has driven the evolutionary adaptation of , shaping its metabolism to produce enzymes adept at lignocellulosic biomass degradation. In this study, we undertook the comprehensive sequencing, assembly, and functional annotation of the genome of strain LEU18496, mutualistic fungus of the . Our genomic analyses revealed a distinctive bimodal nature to the genome: a predominant region characterized by AT enrichment and low genetic density, alongside a smaller region exhibiting higher GC content and higher genetic density. The presence of transposable elements (TEs) within the AT-enriched region suggests genomic compartmentalization, facilitating differential evolutionary rates. With a gene count of 6748, the assembled genome of LEU18496 surpasses previous reports for this fungal species. Inspection of genes associated with central metabolism unveiled a remarkable abundance of carbohydrate-active enzymes (CAZymes) and fungal oxidative lignin enzymes (FOLymes), underscoring their pivotal roles in the life cycle of this fungus.

摘要

担子菌真菌能够在切叶蚁的真菌园中生长。这种互利共生的相互作用推动了 的进化适应,使其代谢发生改变,从而产生擅长木质纤维素生物质降解的酶。在这项研究中,我们对 共生真菌 LEU18496 的基因组进行了全面测序、组装和功能注释。我们的基因组分析揭示了该基因组的独特双峰性质:一个主要区域的特征是富含 AT 和遗传密度低,而较小的区域则表现出更高的 GC 含量和更高的遗传密度。转座元件 (TEs) 在富含 AT 的区域的存在表明存在基因组区室化,从而促进了不同的进化速度。组装的 LEU18496 基因组的基因数为 6748,超过了之前对此真菌物种的报道。对与中心代谢相关的基因进行检查,揭示了大量的碳水化合物活性酶 (CAZymes) 和真菌氧化木质素酶 (FOLymes),这突显了它们在该真菌生命周期中的关键作用。

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