• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

智利患病银大麻哈鱼（）分离株的基因组草图。

Draft genome for isolates from diseased coho salmon () in Chile.

作者信息

Avendaño-Herrera Ruben, Saldarriaga-Córdoba Mónica, Ilardi Pedro

机构信息

Universidad Andrés Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Viña del Mar, Chile.

Centro FONDAP, Interdisciplinary Center for Aquaculture Research (INCAR), Universidad Andrés Bello, Viña del Mar, Chile.

出版信息

Microbiol Resour Announc. 2024 Sep 10;13(9):e0054724. doi: 10.1128/mra.00547-24. Epub 2024 Aug 20.

DOI:10.1128/mra.00547-24
PMID:39162458
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11385106/
Abstract

We present the draft genome sequences of six isolates recovered from diseased coho salmon () cultured by two farms in Chile. This study provides the first detailed insights into the genomic characteristics of this fish pathogen recovered from a host with limited information and cultured in Chile.

摘要

我们展示了从智利两个养殖场养殖的患病银大麻哈鱼（Oncorhynchus kisutch）中分离出的六个菌株的基因组序列草图。这项研究首次详细深入了解了从信息有限且在智利养殖的宿主中分离出的这种鱼类病原体的基因组特征。

相似文献

1
Draft genome for isolates from diseased coho salmon () in Chile.智利患病银大麻哈鱼（）分离株的基因组草图。
Microbiol Resour Announc. 2024 Sep 10;13(9):e0054724. doi: 10.1128/mra.00547-24. Epub 2024 Aug 20.
2
Varying shedding dynamics in three bacterial coldwater disease-susceptible salmonid (Family ) species.三种冷水性鲑科（Family ）鱼类对细菌性疾病易感性的脱落动力学变化。
Microbiol Spectr. 2024 Feb 6;12(2):e0360123. doi: 10.1128/spectrum.03601-23. Epub 2023 Dec 19.
3
Host-specific preference of some Flavobacterium psychrophilum multilocus sequence typing genotypes determines their ability to cause bacterial coldwater disease in coho salmon (Oncorhynchus kisutch).一些嗜冷黄杆菌多位点序列分型基因型对宿主的特异性偏好决定了它们在银大麻哈鱼（Oncorhynchus kisutch）中引起细菌性冷水病的能力。
J Fish Dis. 2021 May;44(5):521-531. doi: 10.1111/jfd.13340. Epub 2021 Jan 21.
4
Genetic Diversity of Flavobacterium psychrophilum Isolates from Three Oncorhynchus spp. in the United States, as Revealed by Multilocus Sequence Typing.多位点序列分型揭示美国三种太平洋鲑属鱼类中嗜冷黄杆菌分离株的遗传多样性
Appl Environ Microbiol. 2016 May 16;82(11):3246-3255. doi: 10.1128/AEM.00411-16. Print 2016 Jun 1.
5
Genetic diversity of Flavobacterium psychrophilum recovered from commercially raised rainbow trout, Oncorhynchus mykiss (Walbaum), and spawning coho salmon, O. kisutch (Walbaum).从商业养殖的虹鳟鱼（Oncorhynchus mykiss，Walbaum）和产卵的银大麻哈鱼（O. kisutch，Walbaum）中分离出的嗜冷黄杆菌的遗传多样性。
J Fish Dis. 2008 Oct;31(10):765-73. doi: 10.1111/j.1365-2761.2008.00950.x. Epub 2008 Aug 4.
6
Serological diversity in Flavobacterium psychrophilum: A critical update using isolates retrieved from Chilean salmon farms.嗜冷黄杆菌的血清学多样性：利用从智利鲑鱼养殖场分离出的菌株进行的重要更新
J Fish Dis. 2020 Aug;43(8):877-888. doi: 10.1111/jfd.13199. Epub 2020 Jun 21.
7
Immersion challenge of three salmonid species (family Salmonidae) with three multilocus sequence typing variants of Flavobacterium psychrophilum provides evidence of differential host specificity.用嗜冷黄杆菌的三种多位点序列分型变体对三种鲑科鱼类（鲑科）进行浸泡攻毒试验，结果表明宿主特异性存在差异。
J Fish Dis. 2023 Nov 16. doi: 10.1111/jfd.13889.
8
Enhanced efficacy of an attenuated Flavobacterium psychrophilum strain cultured under iron-limited conditions.在缺铁条件下培养的减毒嗜冷杆菌菌株的增强功效。
Fish Shellfish Immunol. 2013 Nov;35(5):1477-82. doi: 10.1016/j.fsi.2013.08.009. Epub 2013 Aug 26.
9
Introduction, expansion and coexistence of epidemic Flavobacterium psychrophilum lineages in Chilean fish farms.引言：嗜冷杀鲑气单胞菌系在智利鱼类养殖场的扩张与共存。
Vet Microbiol. 2014 Jun 4;170(3-4):298-306. doi: 10.1016/j.vetmic.2014.02.009. Epub 2014 Feb 16.
10
Phenotypic and Genetic Characterization of Flavobacterium psychrophilum Recovered from Diseased Salmonids in China.从中国患病鲑鱼中分离的嗜冷杆菌的表型和遗传特征。
Microbiol Spectr. 2021 Oct 31;9(2):e0033021. doi: 10.1128/Spectrum.00330-21. Epub 2021 Sep 15.

本文引用的文献

1
PLSDB: advancing a comprehensive database of bacterial plasmids.PLSDB：推进细菌质粒的综合数据库。
Nucleic Acids Res. 2022 Jan 7;50(D1):D273-D278. doi: 10.1093/nar/gkab1111.
2
Host-specific preference of some Flavobacterium psychrophilum multilocus sequence typing genotypes determines their ability to cause bacterial coldwater disease in coho salmon (Oncorhynchus kisutch).一些嗜冷黄杆菌多位点序列分型基因型对宿主的特异性偏好决定了它们在银大麻哈鱼（Oncorhynchus kisutch）中引起细菌性冷水病的能力。
J Fish Dis. 2021 May;44(5):521-531. doi: 10.1111/jfd.13340. Epub 2021 Jan 21.
3
Using SPAdes De Novo Assembler.使用 SPAdes 从头组装。
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102.
4
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
5
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
6
Population structure of the fish-pathogenic bacterium Flavobacterium psychrophilum.鱼类致病细菌嗜冷黄杆菌的种群结构
Appl Environ Microbiol. 2008 Jun;74(12):3702-9. doi: 10.1128/AEM.00244-08. Epub 2008 Apr 18.
7
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
Development of a polymerase chain reaction assay for identification and detection of the fish pathogen Flavobacterium psychrophilum.用于鉴定和检测鱼类病原菌嗜冷黄杆菌的聚合酶链反应检测方法的开发。
Res Microbiol. 1998 Jul-Aug;149(7):519-30. doi: 10.1016/s0923-2508(98)80006-5.