智利患病银大麻哈鱼（）分离株的基因组草图。
Draft genome for isolates from diseased coho salmon () in Chile.
作者信息
Avendaño-Herrera Ruben, Saldarriaga-Córdoba Mónica, Ilardi Pedro
机构信息
Universidad Andrés Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Viña del Mar, Chile.
Centro FONDAP, Interdisciplinary Center for Aquaculture Research (INCAR), Universidad Andrés Bello, Viña del Mar, Chile.
出版信息
Microbiol Resour Announc. 2024 Sep 10;13(9):e0054724. doi: 10.1128/mra.00547-24. Epub 2024 Aug 20.
Abstract
We present the draft genome sequences of six isolates recovered from diseased coho salmon () cultured by two farms in Chile. This study provides the first detailed insights into the genomic characteristics of this fish pathogen recovered from a host with limited information and cultured in Chile.
摘要
我们展示了从智利两个养殖场养殖的患病银大麻哈鱼（Oncorhynchus kisutch）中分离出的六个菌株的基因组序列草图。这项研究首次详细深入了解了从信息有限且在智利养殖的宿主中分离出的这种鱼类病原体的基因组特征。
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本文引用的文献
1
PLSDB: advancing a comprehensive database of bacterial plasmids.
Nucleic Acids Res. 2022 Jan 7;50(D1):D273-D278. doi: 10.1093/nar/gkab1111.
2
Host-specific preference of some Flavobacterium psychrophilum multilocus sequence typing genotypes determines their ability to cause bacterial coldwater disease in coho salmon (Oncorhynchus kisutch).
J Fish Dis. 2021 May;44(5):521-531. doi: 10.1111/jfd.13340. Epub 2021 Jan 21.
3
Using SPAdes De Novo Assembler.
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102.
4
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
5
QUAST: quality assessment tool for genome assemblies.
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
6
Population structure of the fish-pathogenic bacterium Flavobacterium psychrophilum.
Appl Environ Microbiol. 2008 Jun;74(12):3702-9. doi: 10.1128/AEM.00244-08. Epub 2008 Apr 18.
7
The RAST Server: rapid annotations using subsystems technology.
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
Development of a polymerase chain reaction assay for identification and detection of the fish pathogen Flavobacterium psychrophilum.
Res Microbiol. 1998 Jul-Aug;149(7):519-30. doi: 10.1016/s0923-2508(98)80006-5.
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