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解析 HLF 在特发性眼眶炎症中的作用:基于生物信息学和机器学习技术的综合分析。

Deciphering the role of HLF in idiopathic orbital inflammation: integrative analysis via bioinformatics and machine learning techniques.

机构信息

Hunan University of Traditional Chinese Medicine, Changsha, 410208, Hunan, China.

Dongying People's Hospital (Dongying Hospital of Shandong Provincial Hospital Group), Dongying, Shandong, 257091, People's Republic of China.

出版信息

Sci Rep. 2024 Aug 20;14(1):19346. doi: 10.1038/s41598-024-68890-x.

Abstract

Idiopathic orbital inflammation, formerly known as NSOI (nonspecific orbital inflammation), is characterized as a spectrum disorder distinguished by the polymorphic infiltration of lymphoid tissue, presenting a complex and poorly understood etiology. Recent advancements have shed light on the HLF (Human lactoferrin), proposing its critical involvement in the regulation of hematopoiesis and the maintenance of innate mucosal immunity. This revelation has generated significant interest in exploring HLF's utility as a biomarker for NSOI, despite the existing gaps in our understanding of its biosynthetic pathways and operational mechanisms. Intersecting multi-omic datasets-specifically, common differentially expressed genes between GSE58331 and GSE105149 from the Gene Expression Omnibus and immune-related gene compendiums from the ImmPort database-we employed sophisticated analytical methodologies, including Lasso regression and support vector machine-recursive feature elimination, to identify HLF. Gene set enrichment analysis and gene set variation analysis disclosed significant immune pathway enrichment within gene sets linked to HLF. The intricate relationship between HLF expression and immunological processes was further dissected through the utilization of CIBERSORT and ESTIMATE algorithms, which assess characteristics of the immune microenvironment, highlighting a noteworthy association between increased HLF expression and enhanced immune cell infiltration. The expression levels of HLF were corroborated using data from the GSE58331 dataset, reinforcing the validity of our findings. Analysis of 218 HLF-related differentially expressed genes revealed statistically significant discrepancies. Fifteen hub genes were distilled using LASSO and SVM-RFE algorithms. Biological functions connected with HLF, such as leukocyte migration, ossification, and the negative regulation of immune processes, were illuminated. Immune cell analysis depicted a positive correlation between HLF and various cells, including resting mast cells, activated NK cells, plasma cells, and CD8 T cells. Conversely, a negative association was observed with gamma delta T cells, naive B cells, M0 and M1 macrophages, and activated mast cells. Diagnostic assessments of HLF in distinguishing NSOI showed promising accuracy. Our investigation delineates HLF as intricately associated with NSOI, casting light on novel biomarkers for diagnosis and progression monitoring of this perplexing condition.

摘要

特发性眼眶炎症,以前称为 NSOI(非特异性眼眶炎症),其特征是多态性淋巴组织浸润的谱障碍,表现出复杂且尚未被充分理解的病因。最近的进展揭示了 HLF(人乳铁蛋白),提出其在造血调节和固有黏膜免疫维持中的关键作用。这一发现引起了人们对探索 HLF 作为 NSOI 生物标志物的兴趣,尽管我们对其生物合成途径和作用机制的理解仍存在差距。我们利用了多组学数据集,特别是从基因表达综合数据库(GEO)中获取的 GSE58331 和 GSE105149 数据集,以及 ImmPort 数据库中的免疫相关基因文库,采用了复杂的分析方法,包括 Lasso 回归和支持向量机递归特征消除,以鉴定 HLF。基因集富集分析和基因集变异分析揭示了与 HLF 相关的基因集中存在显著的免疫途径富集。通过使用 CIBERSORT 和 ESTIMATE 算法进一步剖析 HLF 表达与免疫过程之间的复杂关系,这些算法评估免疫微环境的特征,突出了 HLF 表达增加与免疫细胞浸润增强之间的显著关联。通过使用 GSE58331 数据集的数据来验证 HLF 的表达水平,从而证实了我们的发现的有效性。对 218 个与 HLF 相关的差异表达基因进行分析,发现存在统计学显著差异。使用 LASSO 和 SVM-RFE 算法提取了 15 个枢纽基因。揭示了与 HLF 相关的生物学功能,如白细胞迁移、骨化和免疫过程的负调节。免疫细胞分析描绘了 HLF 与各种细胞之间的正相关,包括静止肥大细胞、激活 NK 细胞、浆细胞和 CD8 T 细胞。相反,与 γδ T 细胞、幼稚 B 细胞、M0 和 M1 巨噬细胞以及激活的肥大细胞之间存在负相关。HLF 用于区分 NSOI 的诊断评估显示出有希望的准确性。我们的研究表明 HLF 与 NSOI 密切相关,为这种复杂疾病的诊断和进展监测提供了新的生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37d5/11336107/aa6da95fe420/41598_2024_68890_Fig1_HTML.jpg

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