ACSS3作为预后和免疫治疗反应生物标志物的全面泛癌分析。
Comprehensive pan-cancer analysis of ACSS3 as a biomarker for prognosis and immunotherapy response.
作者信息
Zhang Zhanzhan, Yan Hongshan, Tong Hao, Guo Kai, Song Zihan, Jin Qianxu, Zhao Zijun, Zhao Zongmao, Shi Yunpeng
机构信息
Department of Neurosurgery, The Second Hospital of Hebei Medical University, Shijiazhuang, Hebei, 050000, China.
Department of Neurosurgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang, Hebei, 050000, China.
出版信息
Heliyon. 2024 Jul 26;10(15):e35231. doi: 10.1016/j.heliyon.2024.e35231. eCollection 2024 Aug 15.
BACKGROUND
ACSS3 (acyl-CoA synthetase short-chain family member 3) is found in numerous tissues and is linked to tumor cell type development and metastasis.
METHODS
We conducted a comprehensive pan-cancer analysis of ACSS3. The TCGA (Cancer Genome Atlas), CPTAC (Clinical Proteomic Tumor Analysis Consortium), and HPA databases were used to ascertain the connection between ACSS3 and various types of tumors. Genes in the TCGA database would be identified using cBioPortal queries, and their transcriptome expression would then be verified using GEO data. ACSS3 expression and cellular localization in various tumor tissues of most cancer types were analyzed using single-cell sequencing data from the TISCH database. According to HPA and CPTAC databases, we analyzed and evaluated protein expression levels. Predictive analysis based on precise survival data of ACSS3 expression levels for 26 cancer types predicted using the TCGA database. Furthermore, we investigated the relationship between ACSS3 and immune microenvironments in different tumor tissues using the TIMER and TISCH databases. CellMiner, GDSC, and CTRP data would clarify the relationship between ACSS3 and drug resistance and explore the chemicals that affect ACSS3 expression. The final part of our study explored and validated the role ACSS3 played in glioma proliferation, migration, and invasion.
RESULTS
ACSS3 is differentially expressed in various tumors and exhibits early diagnostic value. ACSS3 expression is associated with clinical features, and high ACSS expression anticipates a worse prognosis in multiple tumors and may impact drug sensitivity. The changes in the immunosuppressive microenvironment of gliomas are closely related to the upregulation of ACSS3.
CONCLUSIONS
ACSS3 is a novel biomarker for forecasting different human cancer prognoses, as it can influence the biological process by modulating the immune microenvironment. ACSS3 is a critical prognostic factor for glioma and is related to its proliferation, migration, and invasion.
背景
酰基辅酶A合成酶短链家族成员3(ACSS3)存在于多种组织中,与肿瘤细胞类型的发展和转移有关。
方法
我们对ACSS3进行了全面的泛癌分析。使用癌症基因组图谱(TCGA)、临床蛋白质组肿瘤分析联盟(CPTAC)和人类蛋白质图谱(HPA)数据库来确定ACSS3与各种肿瘤类型之间的联系。通过cBioPortal查询识别TCGA数据库中的基因,然后使用基因表达综合数据库(GEO)数据验证其转录组表达。利用来自肿瘤单细胞综合数据库(TISCH)的单细胞测序数据,分析了大多数癌症类型的各种肿瘤组织中ACSS3的表达和细胞定位。根据HPA和CPTAC数据库,我们分析并评估了蛋白质表达水平。基于使用TCGA数据库预测的26种癌症类型的ACSS3表达水平的精确生存数据进行预测分析。此外,我们使用肿瘤免疫估计资源(TIMER)和TISCH数据库研究了ACSS3与不同肿瘤组织中免疫微环境之间的关系。CellMiner、基因组药物敏感性数据库(GDSC)和癌症治疗反应门户(CTRP)数据将阐明ACSS3与耐药性之间的关系,并探索影响ACSS3表达的化学物质。我们研究的最后一部分探索并验证了ACSS3在胶质瘤增殖、迁移和侵袭中所起的作用。
结果
ACSS3在各种肿瘤中差异表达,并具有早期诊断价值。ACSS3表达与临床特征相关,ACSS高表达预示多种肿瘤预后较差,且可能影响药物敏感性。胶质瘤免疫抑制微环境的变化与ACSS3的上调密切相关。
结论
ACSS3是一种预测不同人类癌症预后的新型生物标志物,因为它可以通过调节免疫微环境来影响生物学过程。ACSS3是胶质瘤的关键预后因素,与其增殖、迁移和侵袭有关。