Uji Toshiki, Kandori Takuya, Mizuta Hiroyuki
Laboratory of Aquaculture Genetics and Genomics, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Front Plant Sci. 2024 Aug 6;15:1417582. doi: 10.3389/fpls.2024.1417582. eCollection 2024.
, a significant brown macroalga in the Pacific Ocean, serves as a food source and industrial material. In aquaculture, collecting mature sporophytes for seedling production is essential but challenging due to environmental changes. In this study, transcriptomic analysis of vegetative and sorus tissues was done to identify differentially expressed genes (DEGs) and enhance our understanding of sorus formation regulation in . KEGG pathway and Gene Otology (GO) analysis revealed that upregulated DEGs were involved in folate biosynthesis, riboflavin metabolism, and amino acid biosynthesis. In addition, the upregulation of genes associated with cell wall remodeling, such as mannuronan C-5-epimerases, vanadium-dependent haloperoxidases, and NADPH oxidase, was observed in sorus parts. Meanwhile, downregulated DEGs in sorus portions included genes related to chloroplast function. These findings will help us understand the regulatory mechanisms behind sorus formation in and extracellular matrix remodeling in brown algae.
作为太平洋中的一种重要大型褐藻,既是食物来源又是工业原料。在水产养殖中,收集成熟的孢子体用于育苗生产至关重要,但由于环境变化颇具挑战性。在本研究中,对营养组织和孢子囊组织进行了转录组分析,以鉴定差异表达基因(DEGs),并增进我们对孢子囊形成调控的理解。KEGG通路和基因本体论(GO)分析表明,上调的DEGs参与叶酸生物合成、核黄素代谢和氨基酸生物合成。此外,在孢子囊部分观察到与细胞壁重塑相关的基因上调,如甘露糖醛酸C-5-表异构酶、钒依赖性卤过氧化物酶和NADPH氧化酶。同时,孢子囊部分下调的DEGs包括与叶绿体功能相关的基因。这些发现将有助于我们理解孢子囊形成背后的调控机制以及褐藻细胞外基质重塑。