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新型功能化吡唑并呋喃-2(5H)-酮衍生物的一锅多组分合成:作为冠状病毒抑制剂的体外、密度泛函理论(DFT)、分子对接和药效团研究

One pot multi-component synthesis of novel functionalized pyrazolo furan-2(5H)-one derivatives: in vitro, DFT, molecular docking, and pharmacophore studies, as coronavirus inhibitors.

作者信息

Elsisi Doaa M, Mohamed Ashraf M, Seadawy Mohamed G, Ahmed Aya, Abou-Amra Eman S

机构信息

Department of Chemistry, Faculty of Science (Girl's Branch), Al-Azhar University, Yousef Abbas Street, Cairo, 11754, Nasr City, Egypt.

Applied Organic Chemistry Department, National Research Centre, Dokki, 12622, Giza, Egypt.

出版信息

Mol Divers. 2025 Apr;29(2):965-989. doi: 10.1007/s11030-024-10885-x. Epub 2024 Aug 22.

Abstract

New and facile one-pot approach for the syntheses of 12 derivatives of 3,5-disubstituted furane-2(5H)-one (4a-l) from easily available starting materials. The suitable synthetic procedures for selective synthesis of diverse furane-2(5H)-one derivatives were achieved via multi-component condensation of 1,3-diphenyl-1H-pyrazole-4-carbaldehyde (1), pyruvic acid and different aromatic amines 3a-l in good to high yields and short reaction time by refluxing in acetic acid as well as obtained by another method (method B) when unsaturated arylidene pyruvic acid 6 was refluxed with different aromatic amines in acetic acid but in smaller yield than method A. Structures of the prepared compounds were elucidated by elemental analysis and spectral data as mass, IR, H-NMR and C-NMR spectroscopy. The antiviral efficacy of compounds 4a-l against SARS-CoV-2 was evaluated using the MTT assay. It was demonstrated that synthetic compounds 4c-e and 4h-j have a potent and selective inhibitory effect on SARS-CoV-2, a strain obtained from Egyptian patients. We utilized density-functional theory (DFT) analyses to deduce the molecular structures and topologies of the more energetic molecules. Molecular docking studies were performed against the SARS-CoV-2 main protease (PDB ID: 6Y84) and the SARS-CoV-2 Nsp9 RNA binding protein (PDB ID: 6W4B) to study the binding mechanism, non-bonding interactions, and binding affinity. Lastly, a hypothetical pharmacophore model was constructed by applying the Molecular Operating Environment (MOE) tool and eleven pharmaceuticals with proven antiviral activity.

摘要

一种新颖且简便的一锅法,可从容易获得的起始原料合成12种3,5-二取代呋喃-2(5H)-酮衍生物(4a-l)。通过1,3-二苯基-1H-吡唑-4-甲醛(1)、丙酮酸和不同的芳香胺3a-l在乙酸中回流,以良好至高产率和较短反应时间实现了选择性合成多种呋喃-2(5H)-酮衍生物的合适合成方法,并且当不饱和亚芳基丙酮酸6与不同的芳香胺在乙酸中回流时,通过另一种方法(方法B)也可得到这些衍生物,但产率低于方法A。通过元素分析以及质谱、红外光谱、氢核磁共振光谱和碳核磁共振光谱等光谱数据对所制备化合物的结构进行了阐明。使用MTT法评估了化合物4a-l对SARS-CoV-2的抗病毒功效。结果表明,合成化合物4c-e和4h-j对从埃及患者分离出的SARS-CoV-2毒株具有强效且选择性的抑制作用。我们利用密度泛函理论(DFT)分析来推导能量较高分子的分子结构和拓扑结构。针对SARS-CoV-2主要蛋白酶(PDB ID:6Y84)和SARS-CoV-2 Nsp9 RNA结合蛋白(PDB ID:6W4B)进行了分子对接研究,以研究其结合机制、非键相互作用和结合亲和力。最后,通过应用分子操作环境(MOE)工具和11种具有已证实抗病毒活性的药物构建了一个假设的药效团模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ac0/11909067/f29a4b6d8544/11030_2024_10885_Fig1_HTML.jpg

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