Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia.
A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
Proteins. 2024 Dec;92(12):1449-1458. doi: 10.1002/prot.26739. Epub 2024 Aug 22.
Several clades of luminescent bacteria are known currently. They all contain similar lux operons, which include the genes luxA and luxB encoding a heterodimeric luciferase. The aldehyde oxygenation reaction is presumed to be catalyzed primarily by the subunit LuxA, whereas LuxB is required for efficiency and stability of the complex. Recently, genomic analysis identified a subset of bacterial species with rearranged lux operons lacking luxB. Here, we show that the product of the luxA gene from the reduced luxACDE operon of Enhygromyxa salina is luminescent upon addition of aldehydes both in vivo in Escherichia coli and in vitro. Overall, EsLuxA is much less bright compared with luciferases from Aliivibrio fischeri (AfLuxAB) and Photorhabdus luminescens (PlLuxAB), and most active with medium-chain C4-C9 aldehydes. Crystal structure of EsLuxA determined at the resolution of 2.71 Å reveals a (β/α) TIM-barrel fold, characteristic for other bacterial luciferases, and the protein preferentially forms a dimer in solution. The mobile loop residues 264-293, which form a β-hairpin or a coil in Vibrio harveyi LuxA, form α-helices in EsLuxA. Phylogenetic analysis shows EsLuxA and related proteins may be bacterial protoluciferases that arose prior to duplication of the luxA gene and its speciation to luxA and luxB in the previously described luminescent bacteria. Our work paves the way for the development of new bacterial luciferases that have an advantage of being encoded by a single gene.
目前已知有几个发光细菌的进化枝。它们都含有相似的 lux 操纵子,其中包括编码异二聚体荧光酶的 luxA 和 luxB 基因。醛的氧化反应被认为主要由亚基 LuxA 催化,而 LuxB 则是复合物效率和稳定性所必需的。最近,基因组分析鉴定出了一组具有重新排列的 lux 操纵子但缺乏 luxB 的细菌物种。在这里,我们表明,来自 Enhygromyxa salina 的简化 luxACDE 操纵子的 luxA 基因的产物在体内大肠杆菌和体外加入醛时是发光的。总的来说,与 Aliivibrio fischeri(AfLuxAB)和 Photorhabdus luminescens(PlLuxAB)的荧光酶相比,EsLuxA 的亮度要低得多,并且与中链 C4-C9 醛的活性最高。EsLuxA 的晶体结构在 2.71Å 的分辨率下确定,揭示了一个(β/α)TIM 桶折叠,这是其他细菌荧光酶的特征,并且该蛋白在溶液中优先形成二聚体。可移动的环残基 264-293 在 Vibrio harveyi LuxA 中形成β发夹或卷曲,在 EsLuxA 中形成α螺旋。系统发育分析表明,EsLuxA 和相关蛋白可能是细菌原荧光酶,它们在 luxA 基因及其在先前描述的发光细菌中 luxA 和 luxB 的种化之前就出现了。我们的工作为开发新的细菌荧光酶铺平了道路,这些荧光酶具有由单个基因编码的优势。