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用刘维尔量子主方程计算生物电导率

Computation of biological conductance with Liouville quantum master equation.

作者信息

Papp Eszter, Vattay Gábor

机构信息

Department of Physics of Complex Systems, Eötvös Loránd University, Egyetem tér 1-3., Budapest, 1053, Hungary.

出版信息

Sci Rep. 2024 Aug 23;14(1):19571. doi: 10.1038/s41598-024-70348-z.

DOI:10.1038/s41598-024-70348-z
PMID:39174593
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11341803/
Abstract

Recent experiments have revealed that single proteins can display high conductivity, which stays finite for low temperatures, decays slowly with distance, and exhibits a rich spatial structure featuring highly conducting and strongly insulating domains. Here, we intruduce a new formula by combining the density matrix of the Liouville-Master Equation simulating quantum transport in nanoscale devices, and the phenomenological model of electronic conductance through molecules, that can account for the observed distance- and temperature dependence of conductance in proteins. We demonstrate its efficacy on experimentally highly conductive extracellular cytochrome nanowires, which are good candidates to illustrate our new approach by calculating and visualizing their electronic wiring, given the interest in the arrangement of their conducting and insulating parts. As proteins and protein nanowires exhibit significant potential for diverse applications, including energy production and sensing, our computational technique can accelerate the design of nano-bioelectronic devices.

摘要

最近的实验表明,单个蛋白质可呈现高导电性,这种导电性在低温下保持有限值,随距离缓慢衰减,并展现出具有高导电域和强绝缘域的丰富空间结构。在此,我们通过结合用于模拟纳米级器件中量子输运的刘维尔 - 主方程的密度矩阵与分子电子传导的唯象模型,引入了一个新公式,该公式能够解释蛋白质中观察到的电导率与距离和温度的依赖关系。鉴于对其导电和绝缘部分排列的兴趣,我们通过计算和可视化实验中高导电的细胞外细胞色素纳米线的电子布线,证明了该公式在这些纳米线上的有效性,这些纳米线是阐释我们新方法的良好候选对象。由于蛋白质和蛋白质纳米线在包括能量产生和传感在内的各种应用中展现出巨大潜力,我们的计算技术可加速纳米生物电子器件的设计。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93af/11341803/942630d8edc1/41598_2024_70348_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93af/11341803/d976144fc86a/41598_2024_70348_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93af/11341803/05a7af0e5405/41598_2024_70348_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93af/11341803/942630d8edc1/41598_2024_70348_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93af/11341803/d976144fc86a/41598_2024_70348_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93af/11341803/05a7af0e5405/41598_2024_70348_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93af/11341803/942630d8edc1/41598_2024_70348_Fig3_HTML.jpg

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本文引用的文献

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Near-Temperature-Independent Electron Transport Well beyond Expected Quantum Tunneling Range via Bacteriorhodopsin Multilayers.通过细菌视紫红质多层膜实现远超预期量子隧穿范围的近温度独立电子传输。
J Am Chem Soc. 2023 Nov 6;145(45):24820-35. doi: 10.1021/jacs.3c09120.
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Extracellular cytochrome nanowires appear to be ubiquitous in prokaryotes.细胞外细胞色素纳米线似乎在原核生物中无处不在。
Cell. 2023 Jun 22;186(13):2853-2864.e8. doi: 10.1016/j.cell.2023.05.012. Epub 2023 Jun 7.
3
Experimental Data Confirm Carrier-Cascade Model for Solid-State Conductance across Proteins.
实验数据证实了蛋白质间固态电导的载流子级联模型。
J Phys Chem B. 2023 Mar 2;127(8):1728-1734. doi: 10.1021/acs.jpcb.2c07946. Epub 2023 Feb 15.
4
Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity.解析: - 关键词: - Geobacter:产电菌属 - cytochrome:细胞色素 - OmcZ:OmcS 蛋白 - nanowire:纳米线 - 译文:产电菌属 OmcZ 细胞色素的结构解析纳米线组装和导电性的作用机制。
Nat Microbiol. 2023 Feb;8(2):284-298. doi: 10.1038/s41564-022-01315-5. Epub 2023 Feb 2.
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Structure of OmcZ filaments suggests extracellular cytochrome polymers evolved independently multiple times.OmcZ 纤维的结构表明,细胞外细胞色素聚合物是多次独立进化而来的。
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