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公共视网膜光学相干断层扫描数据集概述:获取、注释及其他方面。

An Overview of Public Retinal Optical Coherence Tomography Datasets: Access, Annotations, and Beyond.

作者信息

Rozhyna Anastasiia, Somfai Gábor Márk, Atzori Manfredo, Müller Henning

机构信息

University of Applied Sciences Western Switzerland (HES-SO), Sierre, Switzerland.

University of Geneva, Geneva, Switzerland.

出版信息

Stud Health Technol Inform. 2024 Aug 22;316:1664-1668. doi: 10.3233/SHTI240743.

Abstract

In ophthalmology, Optical Coherence Tomography (OCT) has become a daily used tool in the diagnostics and therapeutic planning of various diseases. Publicly available datasets play a crucial role in advancing research by providing access to diverse imaging data for algorithm development. The accessibility, data format, annotations, and metadata are not consistent across OCT datasets, making it challenging to efficiently use the available resources. This article provides a comprehensive analysis of different OCT datasets, with particular attention to dataset properties, disease representation, accessibility, and aims to create a catalog of all publicly available OCT datasets. The goal is to improve accessibility to OCT data, increase openness about the availability, and give important new perspectives on the state of OCT imaging resources. Our findings reveal the need for improved data-sharing practices and standardized documentation.

摘要

在眼科领域,光学相干断层扫描(OCT)已成为各种疾病诊断和治疗规划中日常使用的工具。公开可用的数据集通过提供用于算法开发的各种成像数据,在推动研究方面发挥着至关重要的作用。不同OCT数据集在可访问性、数据格式、注释和元数据方面并不一致,这使得有效利用现有资源具有挑战性。本文对不同的OCT数据集进行了全面分析,特别关注数据集属性、疾病表现、可访问性,并旨在创建所有公开可用OCT数据集的目录。目标是提高对OCT数据的可访问性,增加关于可用性的透明度,并为OCT成像资源的现状提供重要的新视角。我们的研究结果表明需要改进数据共享实践和标准化文档。

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