Towards a Reporting Guideline for Studies on Information Extraction from Clinical Texts.

BACKGROUND

The rapid technical progress in the domain of clinical Natural Language Processing and information extraction (IE) has resulted in challenges concerning the comparability and replicability of studies.

AIM

This paper proposes a reporting guideline to standardize the description of methodologies and outcomes for studies involving IE from clinical texts.

METHODS

The guideline is developed based on the experiences gained from data extraction for a previously conducted scoping review on IE from free-text radiology reports including 34 studies.

RESULTS

The guideline comprises the five top-level categories information model, architecture, data, annotation, and outcomes. In total, we define 28 aspects to be reported on in IE studies related to these categories.

CONCLUSIONS

The proposed guideline is expected to set a standard for reporting in studies describing IE from clinical text and promote uniformity across the research field. Expected future technological advancements may make regular updates of the guideline necessary. In future research, we plan to develop a taxonomy that clearly defines corresponding value sets as well as integrating both this guideline and the taxonomy by following a consensus-based methodology.