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对真菌松弛素的小角X射线散射研究揭示了蛋白质1的作用对纤维素底物的原纤维间距离和堆积顺序的底物依赖性影响。

SANS investigation of fungal loosenins reveal substrate dependent impacts of protein 1 action on inter-fibril distance and packing order of cellulosic substrates.

作者信息

Dahiya Deepika, Péter-Szabó Zsuzsanna, Senanayake Manjula, Pingali Sai Venkatesh, Leite Wellington C, Byrnes James, Buchko Garry W, Sivan Pramod, Vilaplana Francisco, Master Emma, O'Neill Hugh

出版信息

Res Sq. 2024 Aug 14:rs.3.rs-4769386. doi: 10.21203/rs.3.rs-4769386/v1.

Abstract

BACKGROUND

Microbial expansin-related proteins include fungal loosenins, which have been previously shown to disrupt cellulose networks and enhance the enzymatic conversion of cellulosic substrates. Despite showing beneficial impacts to cellulose processing, detailed characterization of cellulosic materials after loosenin treatment is lacking. In this study, small-angle neutron scattering (SANS) was used to investigate the effects of three recombinantly produced loosenins that originate from Phanerochaete carnosa, PcaLOOL7, PcaLOOL9, and PcaLOOL12, on the organization of holocellulose preparations from Eucalyptus and Spruce wood samples.

RESULTS

Whereas the SANS analysis of Spruce holocellulose revealed an increase in interfibril spacing of neighboring cellulose microfibrils following treatment with PcaLOOL12 and to a lesser extent PcaLOOL7, the analysis of Eucalyptus holocellulose revealed a reduction in packing number following treatment with PcaLOOL12 and to a lesser extent PcaLOOL9. Parallel SEC-SAXS characterization of PcaLOOL7, PcaLOOL9, and PcaLOOL12 indicated the proteins likely function as monomers; moreover, all appear to retain a flexible disordered N-terminus and folded C-terminal region. The comparatively high impact of PcaLOOL12 motivated its NMR structural characterization, revealing a double-psi b-barrel (DPBB) domain surrounded by three alpha-helices - the largest nestled against the DPBB core and the other two part of loops extending from the core.

CONCLUSIONS

The SANS analysis of PcaLOOL action on holocellulose samples confirms their ability to disrupt cellulose fiber networks and suggests a progression from reducing microfibril packing to increasing interfibril distance. The most impactful PcaLOOL, PcaLOOL12, was previously observed to be the most highly expressed loosenin in P. carnosa. Its structural characterization herein reveals its stabilization through two disulfide linkages, and an extended N-terminal region distal to a negatively charged and surface accessible polysaccharide binding groove.

摘要

背景

微生物膨胀素相关蛋白包括真菌松弛素,此前已证明其可破坏纤维素网络并增强纤维素底物的酶促转化。尽管对纤维素加工显示出有益影响,但缺乏对松弛素处理后纤维素材料的详细表征。在本研究中,小角中子散射(SANS)被用于研究三种重组产生的、源自肉色拟层孔菌的松弛素PcaLOOL7、PcaLOOL9和PcaLOOL12对桉木和云杉木样品全纤维素制剂结构的影响。

结果

对云杉木全纤维素的SANS分析表明,用PcaLOOL12处理后,相邻纤维素微纤丝的原纤间距增加,PcaLOOL7处理的增加幅度较小;对桉木全纤维素的分析表明,用PcaLOOL12处理后堆积数减少,PcaLOOL9处理的减少幅度较小。对PcaLOOL7、PcaLOOL9和PcaLOOL12的平行尺寸排阻色谱 - 小角X射线散射(SEC-SAXS)表征表明,这些蛋白可能以单体形式发挥作用;此外,它们似乎都保留了一个灵活的无序N端和折叠的C端区域。PcaLOOL12的相对较高影响促使对其进行核磁共振(NMR)结构表征,结果显示其具有一个由三个α螺旋包围的双ψβ桶(DPBB)结构域,其中最大的一个靠在DPBB核心上,另外两个是从核心延伸出的环的一部分。

结论

对PcaLOOL作用于全纤维素样品的SANS分析证实了它们破坏纤维素纤维网络的能力,并表明从减少微纤丝堆积到增加原纤间距存在一个过程。最具影响力的PcaLOOL,即PcaLOOL12,此前被观察到是肉色拟层孔菌中表达量最高的松弛素。本文对其结构表征揭示了其通过两个二硫键实现稳定,以及在带负电荷且表面可及的多糖结合槽远端有一个延伸的N端区域。

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