Cueny Rachel R, Voter Andrew F, McKenzie Aidan M, Morgenstern Marcel, Myers Kevin S, Place Michael M, Peters Jason M, Coon Joshua J, Keck James L
Biomolecular Chemistry Department, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin, USA.
National Center for Quantitative Biology of Complex Systems, Madison Wisconsin, USA.
bioRxiv. 2024 Aug 12:2024.08.12.607615. doi: 10.1101/2024.08.12.607615.
G-quadruplex (G4) structures can form in guanine-rich DNA or RNA and have been found to modulate cellular processes including replication, transcription, and translation. Many studies on the cellular roles of G4s have focused on eukaryotic systems, with far fewer probing bacterial G4s. Using a chemical-genetic approach, we identified genes in that are important for growth in G4-stabilizing conditions. Reducing levels of elongation factor Tu or slowing translation elongation with chloramphenicol suppress the effects of G4 stabilization. In contrast, reducing expression of certain translation termination or ribosome recycling proteins is detrimental to growth in G4-stabilizing conditions. Proteomic and transcriptomic analyses demonstrate that ribosome assembly factors and other proteins involved in translation are less abundant in G4-stabilizing conditions. Our integrated systems approach allowed us to propose a model for how RNA G4s can present barriers to growth and that reducing the rate of translation can compensate for G4-related stress.
G-四链体(G4)结构可在富含鸟嘌呤的DNA或RNA中形成,并已发现其可调节包括复制、转录和翻译在内的细胞过程。许多关于G4细胞作用的研究都集中在真核系统上,而对细菌G4的研究则少得多。我们采用化学遗传学方法,鉴定出了在G4稳定条件下对生长至关重要的基因。降低延伸因子Tu的水平或用氯霉素减缓翻译延伸可抑制G4稳定的影响。相反,降低某些翻译终止或核糖体循环蛋白的表达对G4稳定条件下的生长有害。蛋白质组学和转录组学分析表明,在G4稳定条件下,核糖体组装因子和其他参与翻译的蛋白质含量较低。我们的综合系统方法使我们能够提出一个模型,说明RNA G4如何对生长形成障碍,以及降低翻译速率如何补偿G4相关的压力。