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十一项定量或数字 PCR 检测方法在血液样本中检测前病毒牛白血病病毒的实验室间比较。

Inter-laboratory comparison of eleven quantitative or digital PCR assays for detection of proviral bovine leukemia virus in blood samples.

机构信息

Department of Biochemistry, National Veterinary Research Institute, Puławy, 24-100, Poland.

Department of Omics Analyses, National Veterinary Research Institute, 24-100, Puławy, Poland.

出版信息

BMC Vet Res. 2024 Aug 26;20(1):381. doi: 10.1186/s12917-024-04228-z.

DOI:10.1186/s12917-024-04228-z
PMID:39187880
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11346035/
Abstract

Bovine leukemia virus (BLV) is the etiological agent of enzootic bovine leukosis and causes a persistent infection that can leave cattle with no symptoms. Many countries have been able to successfully eradicate BLV through improved detection and management methods. However, with the increasing novel molecular detection methods there have been few efforts to standardize these results at global scale. This study aimed to determine the interlaboratory accuracy and agreement of 11 molecular tests in detecting BLV. Each qPCR/ddPCR method varied by target gene, primer design, DNA input and chemistries. DNA samples were extracted from blood of BLV-seropositive cattle and lyophilized to grant a better preservation during shipping to all participants around the globe. Twenty nine out of 44 samples were correctly identified by the 11 labs and all methods exhibited a diagnostic sensitivity between 74 and 100%. Agreement amongst different assays was linked to BLV copy numbers present in samples and the characteristics of each assay (i.e., BLV target sequence). Finally, the mean correlation value for all assays was within the range of strong correlation. This study highlights the importance of continuous need for standardization and harmonization amongst assays and the different participants. The results underscore the need of an international calibrator to estimate the efficiency (standard curve) of the different assays and improve quantitation accuracy. Additionally, this will inform future participants about the variability associated with emerging chemistries, methods, and technologies used to study BLV. Altogether, by improving tests performance worldwide it will positively aid in the eradication efforts.

摘要

牛白血病病毒 (BLV) 是地方流行性牛白血病的病原体,会导致持续性感染,使牛没有任何症状。许多国家已经能够通过改进的检测和管理方法成功根除 BLV。然而,随着新的分子检测方法的不断出现,很少有努力在全球范围内对这些结果进行标准化。本研究旨在确定 11 种分子检测方法在检测 BLV 方面的实验室间准确性和一致性。每个 qPCR/ddPCR 方法的目标基因、引物设计、DNA 输入和化学物质均有所不同。从 BLV 血清阳性牛的血液中提取 DNA 并冻干,以在运往全球各地的所有参与者时更好地保存。在 11 个实验室中,有 29 个样本被正确识别,所有方法的诊断灵敏度均在 74%至 100%之间。不同检测方法之间的一致性与样本中 BLV 拷贝数以及每个检测方法的特性(即 BLV 靶序列)有关。最后,所有检测方法的平均相关值均在强相关范围内。本研究强调了在检测方法和不同参与者之间持续需要标准化和协调的重要性。研究结果强调了需要国际校准品来评估不同检测方法的效率(标准曲线)并提高定量准确性。此外,这将使未来的参与者了解与新兴化学物质、方法和技术相关的变异性,这些技术用于研究 BLV。总的来说,通过提高全球检测方法的性能,将有助于根除 BLV 的努力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/e08d8fbee3e9/12917_2024_4228_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/89a2499b91f5/12917_2024_4228_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/8c931b39209f/12917_2024_4228_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/06f0668d2015/12917_2024_4228_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/0eeadc09f1f4/12917_2024_4228_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/2fe9dea109fb/12917_2024_4228_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/e08d8fbee3e9/12917_2024_4228_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/89a2499b91f5/12917_2024_4228_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/8c931b39209f/12917_2024_4228_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/06f0668d2015/12917_2024_4228_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/0eeadc09f1f4/12917_2024_4228_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/2fe9dea109fb/12917_2024_4228_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a70b/11346035/e08d8fbee3e9/12917_2024_4228_Fig6_HTML.jpg

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