Yuan Xiaodong, Long Qingxi, Li Wen, Yan Qi, Zhang Pingshu
Department of Neurology of Kailuan General Hospital Affiliated North China University of Science and Technology, 57 Xinhua East Road, Lubei District, Tangshan City, 063000, Hebei Province, China.
Hebei Provincial Key Laboratory of Neurobiological Function, 57 Xinhua East Road, Lubei District, Tangshan City, 063000, Hebei Province, China.
Mol Neurobiol. 2025 Mar;62(3):2926-2944. doi: 10.1007/s12035-024-04414-y. Epub 2024 Aug 27.
We employed single-cell transcriptome sequencing to reveal the dynamic gene expression changes during the differentiation of adipose-derived stromal cells (ADSCs) into astrocytes. Single-cell RNA sequencing was conducted on cells from the ADSCs group and the induced groups at 2, 7, 14, and 21 days using the 10 × Chromium platform. Data underwent quality control and dimensionality reduction. Cell differentiation trajectories were constructed using Monocle2, and differentially expressed genes (DEGs) in each cell cluster were identified using differential selection algorithms. DEGs at each time point were annotated using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG), and regulatory intensities of transcription factors were analyzed using SCENIC. Integrating all groups, a total of five samples were divided into 13 cell clusters (0-12 clusters). DEGs between clusters and those compared with ADSCs at various induced time points showed distinct specificities. Monocle2 constructed cell differentiation trajectories; ADSCs can differentiate into mature astrocytes not only through the direct pathway from the 1 branch to the 3 branch but also through an indirect pathway, involving the 1 branch to the 2 branch before progressing to the 3 branch. SCENIC analysis highlighted the critical regulatory roles of STAT1, MYEF2, and SOX6 transcription factors during the differentiation of ADSCs into astrocytes. ADSCs can differentiate into mature astrocytes through two distinct pathways: direct and indirect. By the 14th day of induction, mature astrocytes have formed, characterized by a cell cycle arrest in mitosis. Further induction leads to degenerative senescence changes in differentiated cells.
我们采用单细胞转录组测序来揭示脂肪来源基质细胞(ADSCs)向星形胶质细胞分化过程中的动态基因表达变化。使用10×Chromium平台对ADSCs组和诱导组在第2、7、14和21天的细胞进行单细胞RNA测序。数据进行了质量控制和降维处理。使用Monocle2构建细胞分化轨迹,并使用差异选择算法识别每个细胞簇中的差异表达基因(DEGs)。每个时间点的DEGs使用基因本体论(GO)和京都基因与基因组百科全书(KEGG)进行注释,并使用SCENIC分析转录因子的调控强度。整合所有组,共五个样本被分为13个细胞簇(0 - 12簇)。簇间的DEGs以及与不同诱导时间点的ADSCs相比的DEGs显示出明显的特异性。Monocle2构建了细胞分化轨迹;ADSCs不仅可以通过从1分支到3分支的直接途径分化为成熟星形胶质细胞,还可以通过间接途径,即先从1分支到2分支再到3分支。SCENIC分析突出了STAT1、MYEF2和SOX6转录因子在ADSCs向星形胶质细胞分化过程中的关键调控作用。ADSCs可以通过两种不同途径分化为成熟星形胶质细胞:直接途径和间接途径。到诱导第14天时,成熟星形胶质细胞已形成,其特征是有丝分裂中的细胞周期停滞。进一步诱导会导致分化细胞发生退行性衰老变化。