Department of Infection, Immunity and Inflammation, University College London, Great Ormond Street Institute of Child Health, London, WC1N 1EH, UK.
Division of Infection and Immunity, University College London, London, WC1E 6BT, UK.
BMC Bioinformatics. 2024 Aug 27;25(1):279. doi: 10.1186/s12859-024-05885-5.
The prevention and treatment of many herpesvirus associated diseases is based on the utilization of antiviral therapies, however therapeutic success is limited by the development of drug resistance. Currently no single database cataloguing resistance mutations exists, which hampers the use of sequence data for patient management. We therefore developed HerpesDRG, a drug resistance mutation database that incorporates all the known resistance genes and current treatment options, built from a systematic review of available genotype to phenotype literature. The database is released along with an R package that provides a simple approach to resistance variant annotation and clinical implication analysis from common sanger and next generation sequencing data. This represents the first openly available and community maintainable database of drug resistance mutations for the human herpesviruses (HHV), developed for the community of researchers and clinicians tackling HHV drug resistance.
许多疱疹病毒相关疾病的预防和治疗都基于抗病毒疗法的应用,然而治疗的成功受到耐药性发展的限制。目前,没有一个单一的数据库可以对耐药突变进行分类,这阻碍了序列数据在患者管理中的应用。因此,我们开发了 HerpesDRG,这是一个耐药突变数据库,其中包含了所有已知的耐药基因和当前的治疗选择,该数据库是通过对现有基因型到表型文献的系统回顾建立的。该数据库与一个 R 包一起发布,该包提供了一种简单的方法,可以从常见的 Sanger 和下一代测序数据中对耐药变异进行注释和临床影响分析。这是第一个针对人类疱疹病毒(HHV)的公开可用的、社区维护的耐药突变数据库,是为解决 HHV 耐药性问题的研究人员和临床医生社区开发的。