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在使用碳 -13 和氮 -15 标记肽段进行相对和绝对蛋白质定量时,由于同位素掺入导致的偏差。

Bias due to isotopic incorporation in both relative and absolute protein quantitation with carbon-13 and nitrogen-15 labeled peptides.

作者信息

Rappold Brian A, Hoofnagle Andrew N

机构信息

Essential Testing, Collinsville, IL 62234, United States.

Department of Laboratory Medicine, University of Washington, Seattle, WA 98195-7110, United States.

出版信息

Clin Mass Spectrom. 2017 Apr 30;3:13-21. doi: 10.1016/j.clinms.2017.04.002. eCollection 2017 Jan.

DOI:10.1016/j.clinms.2017.04.002
PMID:39193099
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11322770/
Abstract

Mass spectrometry provides considerable benefits over other analytical techniques due to advantages imparted by the use of isotopically labeled internal standards. In some analytical approaches, the internal standard provides reference points for quantitative data reduction. However, there is an important phenomenon that occurs in the development of an internal standard, namely the distribution of naturally occurring isotopes is altered by artificial labeling. As a result, the number of molecules measured in each isotopic state (e.g., +0, +1, +2) varies between the manufactured internal standard and the naturally occurring unmodified analyte. This can create inaccuracies that are a function of the abundance, type and location of the isotopic labeling when internal standards act as the calibration material. In this study, theoretical examples calculated with naturally occurring isotopic incorporation, manufactured isotopic enrichment, and experimental data from comparative analysis of naturally and artificially labeled peptides were explored to demonstrate the variation in measurement between analytes and their stable, isotopically labeled internal standards.

摘要

由于使用同位素标记的内标物带来的优势,质谱分析相对于其他分析技术具有显著的优势。在某些分析方法中,内标物为定量数据处理提供参考点。然而,在内标物的开发过程中会出现一个重要现象,即人工标记会改变天然存在的同位素的分布。结果,在每个同位素状态(例如,+0、+1、+2)下测量的分子数量在人工合成的内标物和天然存在的未修饰分析物之间有所不同。当内标物用作校准材料时,这会产生与同位素标记的丰度、类型和位置相关的误差。在本研究中,通过天然存在的同位素掺入、人工合成的同位素富集计算出的理论示例,以及天然和人工标记肽的比较分析的实验数据,来探讨分析物与其稳定的、同位素标记的内标物之间测量值的差异。

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本文引用的文献

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J Labelled Comp Radiopharm. 2016 Apr;59(4):136-46. doi: 10.1002/jlcr.3370. Epub 2016 Feb 24.
2
Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.基于质谱分析的肽段生成、定量、储存及处理建议
Clin Chem. 2016 Jan;62(1):48-69. doi: 10.1373/clinchem.2015.250563.
3
Mass spectrometry-based candidate reference measurement procedure for quantification of amyloid-β in cerebrospinal fluid.基于质谱的脑脊液中淀粉样β蛋白定量候选参考测量程序。
Clin Chem. 2014 Jul;60(7):987-94. doi: 10.1373/clinchem.2013.220392. Epub 2014 May 19.
4
Quantification of a proteotypic peptide from protein C inhibitor by liquid chromatography-free SISCAPA-MALDI mass spectrometry: application to identification of recurrence of prostate cancer.应用免液相色谱 SISCAPA-MALDI 质谱法对蛋白 C 抑制剂的标志性肽进行定量分析:用于前列腺癌复发的鉴定。
Clin Chem. 2013 Oct;59(10):1514-22. doi: 10.1373/clinchem.2012.199786. Epub 2013 Jul 15.
5
Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions.基于选择反应监测的蛋白质组学:工作流程、潜力、陷阱和未来方向。
Nat Methods. 2012 May 30;9(6):555-66. doi: 10.1038/nmeth.2015.
6
Evaluation of absolute peptide quantitation strategies using selected reaction monitoring.使用选择反应监测评估绝对肽定量策略。
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