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. 的线粒体全基因组的特征分析与系统发育分析

Characterization and Phylogenetic Analysis of the Complete Mitochondrial Genome of .

作者信息

Yang Ping, Guo Wei, Wei Chao, Wang Xin, Wang Yixuan, Wang Jia

机构信息

Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life Sciences, Xinjiang Agricultural University, Urumqi 830052, China.

出版信息

Biology (Basel). 2024 Aug 11;13(8):608. doi: 10.3390/biology13080608.

Abstract

The complete mitochondrial genome has been extensively utilized in studies related to phylogenetics, offering valuable perspectives on evolutionary relationships. The mitochondrial genome of the fine-eyed plateau loach, , has not attracted much attention, although this species is endemic to China. In this study, we characterized the mitochondrial genome of and reassessed the classification status of its genus. The complete mitochondrial genome of was 16,591 bp and contained thirty-seven genes, including thirteen protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), and twenty-two transfer RNA genes (tRNAs). All but one of the thirteen PCGs had the regular start codon ATG; the gene started with GTG. Six PCGs had incomplete stop codons (T--). These thirteen PCGs are thought to have evolved under purifying selection, and the mitogenome shared a high degree of similarity with the genomes of species within the genus . All tRNA genes exhibited the standard clover-shaped structure, with the exception of the trnS1 gene, which lacked a DHU stem. A phylogenetic analysis indicated that was more closely related to species within the genus than to those in . The present study contributes valuable genomic information for , and offers new perspectives on the phylogenetic relationships among species of and . The findings also provide essential data that can inform the management and conservation strategies for and other species of and .

摘要

完整的线粒体基因组已在系统发育学相关研究中得到广泛应用,为进化关系提供了有价值的见解。尽管细眼高原鳅是中国特有的物种,但其线粒体基因组尚未受到太多关注。在本研究中,我们对细眼高原鳅的线粒体基因组进行了特征分析,并重新评估了其属的分类地位。细眼高原鳅的完整线粒体基因组为16,591 bp,包含37个基因,其中包括13个蛋白质编码基因(PCGs)、2个核糖体RNA基因(rRNAs)和22个转运RNA基因(tRNAs)。13个PCGs中除一个外,其余均以常规起始密码子ATG开始;COI基因以GTG开始。6个PCGs具有不完全终止密码子(T--)。这13个PCGs被认为是在纯化选择下进化而来的,并且该线粒体基因组与该属内其他物种的基因组具有高度相似性。所有tRNA基因均呈现标准的三叶草形结构,但trnS1基因除外,它缺少DHU茎。系统发育分析表明,细眼高原鳅与该属内其他物种的亲缘关系比与其他属的物种更近。本研究为细眼高原鳅提供了有价值的基因组信息,并为该属及其他属物种之间的系统发育关系提供了新的视角。这些发现还提供了重要数据,可为细眼高原鳅及其他该属和其他属物种的管理和保护策略提供参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/292f/11351504/fcbc792237cd/biology-13-00608-g001.jpg

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