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通过 DNA 条形码宏基因组学技术从历史植物标本中回收与植物相关的节肢动物群落。

Recovering plant-associated arthropod communities by eDNA metabarcoding historical herbarium specimens.

机构信息

Department of Biogeography, Trier University, Universitätsring 15, 54296 Trier, Rhineland-Palatinate, Germany.

Department of Environmental Science, Policy, & Management, University of California, Berkeley, 130 Mulford Hall #3114, Berkeley, CA 94720, USA.

出版信息

Curr Biol. 2024 Sep 23;34(18):4318-4324.e6. doi: 10.1016/j.cub.2024.07.100. Epub 2024 Aug 27.

Abstract

Natural history collections are a priceless resource for understanding patterns and processes of biodiversity change in the Anthropocene. Herbaria, which house millions of historical plant records from all over the globe, are particularly valuable to study population genetics of the plants themselves and to understand the assembly of plant-associated microbial communities. Here we test if herbaria can serve yet another essential purpose, namely to provide information on the historical assembly of plant-arthropod interactions. The specificity and temporal stability of these associations are poorly known. Considering their pivotal role in the assembly of terrestrial food webs, this knowledge is paramount to understanding the consequences of global change. We use environmental DNA (eDNA) metabarcoding to characterize communities of plant-associated arthropods from archived herbarium specimens of different ages and origins. The herbarium specimens yield arthropod DNA across various ecological guilds and trophic levels over multiple decades. In an experiment, we also show that the typical dry storage of plants in herbaria does not alter the recovered arthropod diversity and community composition. By analyzing a time series of leaf samples from a forest monitoring project, we then characterize changes in arthropod biodiversity over two decades, showing that archived plants can also provide the time series data that are urgently needed to understand arthropod declines. This use of herbaria and plant archives promises unprecedented insights into plant-arthropod interactions and revolutionizes our ability to monitor spatiotemporal changes in interaction diversity.

摘要

自然历史藏品是了解人类世生物多样性变化模式和过程的无价资源。标本馆收藏了来自全球各地的数百万份历史植物记录,对于研究植物本身的种群遗传学以及了解植物相关微生物群落的组成特别有价值。在这里,我们测试了标本馆是否可以发挥另一个重要作用,即提供有关植物-节肢动物相互作用历史组装的信息。这些关联的特异性和时间稳定性知之甚少。考虑到它们在陆地食物网组装中的关键作用,了解这些知识对于理解全球变化的后果至关重要。我们使用环境 DNA(eDNA)宏条形码技术来描述来自不同年代和来源的存档标本馆标本中与植物相关的节肢动物群落。这些标本馆标本跨越了多个生态类群和营养水平,在数十年间提供了节肢动物 DNA。在一项实验中,我们还表明,植物在标本馆中的典型干燥储存不会改变回收的节肢动物多样性和群落组成。通过分析森林监测项目的一系列叶片样本,我们随后描述了二十年中节肢动物生物多样性的变化,表明存档植物还可以提供急需的时间序列数据,以了解节肢动物的减少。这种对标本馆和植物档案的利用有望为植物-节肢动物相互作用提供前所未有的深入了解,并彻底改变我们监测相互作用多样性的时空变化的能力。

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