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分子对接与 HOMO-LUMO 稳定相互作用的相关性:CHK1 和 CHK2 中的螺甾烷,一种计算机辅助癌症方法。

Correlation between Molecular Docking and the Stabilizing Interaction of HOMO-LUMO: Spirostans in CHK1 and CHK2, an In Silico Cancer Approach.

机构信息

Laboratorio de Elucidación y Síntesis en Química Orgánica, Instituto de Ciencias, BUAP, Puebla 72570, Mexico.

Laboratorio de Modificación y Síntesis en Productos Naturales, FCQ, BUAP, Puebla 72570, Mexico.

出版信息

Int J Mol Sci. 2024 Aug 6;25(16):8588. doi: 10.3390/ijms25168588.

Abstract

Checkpoint kinases 1 and 2 (CHK1 and CHK2) are enzymes that are involved in the control of DNA damage. At the present time, these enzymes are some of the most important targets in the fight against cancer since their inhibition produces cytotoxic effects in carcinogenic cells. This paper proposes the use of spirostans (Sp), natural compounds, as possible inhibitors of the enzymes CHK1 and CHK2 from an in silico analysis of a database of 155 molecules (S5). Bioinformatics studies of molecular docking were able to discriminate between 13 possible CHK1 inhibitors, 13 CHK2 inhibitors and 1 dual inhibitor for both enzymes. The administration, distribution, metabolism, excretion and toxicity (ADMETx) studies allowed a prediction of the distribution and metabolism of the potential inhibitors in the body, as well as determining the excretion routes and the appropriate administration route. The best inhibition candidates were discriminated by comparing the enzyme-substrate interactions from 2D diagrams and molecular docking. Specific inhibition candidates were obtained, in addition to studying the dual inhibitor candidate and observing their stability in dynamic molecular studies. In addition, Highest Occupied Molecular Orbital-Lowest Unoccupied Molecular Orbital (HOMO-LUMO) interactions were analyzed to study the stability of interactions between the selected enzymes and spirostans resulting in the predominant gaps from HOMOCHKs to LUMOSp (Highest Occupied Molecular Orbital of CHKs-Lowest Unoccupied Molecular Orbital of spirostan). In brief, this study presents the selection inhibitors of CHK1 and CHK2 as a potential treatment for cancer using a combination of molecular docking and dynamics, ADMETx predictons, and HOMO-LUMO calculation for selection.

摘要

检查点激酶 1 和 2(CHK1 和 CHK2)是参与控制 DNA 损伤的酶。目前,这些酶是抗癌斗争中最重要的靶标之一,因为它们的抑制作用会在致癌细胞中产生细胞毒性作用。本文提出了使用螺甾烷(Sp)作为可能的抑制剂,这些天然化合物是从数据库中的 155 种分子(S5)的计算机分析中获得的,用于抑制酶 CHK1 和 CHK2。分子对接的生物信息学研究能够区分 13 种可能的 CHK1 抑制剂、13 种 CHK2 抑制剂和 1 种对两种酶都有抑制作用的双重抑制剂。药物代谢动力学(ADMETx)研究允许预测潜在抑制剂在体内的分布和代谢,以及确定排泄途径和适当的给药途径。通过比较 2D 图谱和分子对接中的酶-底物相互作用,区分最佳抑制候选物。除了研究双重抑制剂候选物并观察其在动态分子研究中的稳定性外,还获得了特定的抑制候选物。此外,还分析了最高占据分子轨道-最低未占据分子轨道(HOMO-LUMO)相互作用,以研究所选酶与螺甾烷之间相互作用的稳定性,导致 HOMOCHKs 到 LUMOSp(CHKs 的最高占据分子轨道-螺甾烷的最低未占据分子轨道)的主要间隙。简而言之,本研究使用分子对接和动力学、ADMETx 预测以及 HOMO-LUMO 计算相结合,选择 CHK1 和 CHK2 的抑制剂作为癌症治疗的潜在方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef1a/11354435/7142b09b8165/ijms-25-08588-g001.jpg

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