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用于筛选聚光复合物 I 三聚体中叶绿素间激子耦合的简单表达式。

A Simple Expression for the Screening of Excitonic Couplings between Chlorophylls as Inferred for Photosystem I Trimers.

机构信息

Institute for Theoretical Physics, Johannes Kepler University Linz, Altenberger Str. 69, 4040 Linz, Austria.

出版信息

Int J Mol Sci. 2024 Aug 19;25(16):9006. doi: 10.3390/ijms25169006.

DOI:10.3390/ijms25169006
PMID:39201694
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11355009/
Abstract

The Coulomb coupling between transition densities of the pigments in photosynthetic pigment-protein complexes, termed excitonic coupling, is a key factor for the description of optical spectra and energy transfer. A challenging question is the quantification of the screening of the excitonic coupling by the optical polarizability of the environment. We use the equivalence between the sophisticated quantum chemical polarizable continuum (PCM) model and the simple electrostatic Poisson-TrEsp approach to analyze the distance and orientation dependence of the dielectric screening between chlorophylls in photosystem I trimers. On the basis of these calculations we find that the vacuum couplings Vmn(0) and the couplings in the dielectric medium Vmn=fmnVmn(0) are related by the empirical screening factor fmn=0.60+39.6θ(|κmn|-1.17)exp(-0.56Rmn/Å), where κmn is the usual orientational factor of the dipole-dipole coupling between the pigments, Rmn is the center-to-center distance, and the Heaviside-function θ(|κmn|-1.17) ensures that the exponential distance dependence only contributes for in-line type dipole geometries. We are confident that the present expression can be applied also to other pigment-protein complexes with chlorophyll or related pigments of similar shape. The variance between the Poisson-TrEsp and the approximate coupling values is found to decrease by a factor of 8 and 3-4 using the present expression, instead of an exponential distance dependent or constant screening factor, respectively, assumed previously in the literature.

摘要

光合作用色素蛋白复合物中色素间的库仑偶极跃迁密度(称为激子偶极跃迁)的耦合是描述光学光谱和能量转移的关键因素。一个具有挑战性的问题是量化环境光学极化率对激子偶极跃迁的屏蔽作用。我们使用复杂的量子化学极化连续体(PCM)模型和简单的静电泊松-TrEsp 方法之间的等价性来分析光合作用 I 三聚体中叶绿素之间的介电屏蔽的距离和方向依赖性。基于这些计算,我们发现真空耦合 Vmn(0) 和介电介质中的耦合 Vmn=fmnVmn(0) 之间的关系可以通过经验屏蔽因子 fmn=0.60+39.6θ(|κmn|-1.17)exp(-0.56Rmn/Å)来表示,其中 κmn 是色素之间偶极-偶极耦合的常规取向因子,Rmn 是中心到中心的距离,而 Heaviside 函数 θ(|κmn|-1.17)确保指数距离依赖性仅适用于直列式偶极几何形状。我们相信,目前的表达式也可以应用于其他具有叶绿素或类似形状相关色素的色素-蛋白复合物。与以前文献中假设的指数距离相关或常数屏蔽因子相比,使用目前的表达式可以将泊松-TrEsp 和近似耦合值之间的差异减小 8 倍和 3-4 倍。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/1c59ec993bf9/ijms-25-09006-g009.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/20a24a8891e6/ijms-25-09006-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/1d0add5e118f/ijms-25-09006-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/1c59ec993bf9/ijms-25-09006-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/5f9c4df972f8/ijms-25-09006-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/77a6810cfc79/ijms-25-09006-g002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/423c3aa56815/ijms-25-09006-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/20a24a8891e6/ijms-25-09006-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/1d0add5e118f/ijms-25-09006-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f03d/11355009/1c59ec993bf9/ijms-25-09006-g009.jpg

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