玉米几丁质酶基因家族的全基因组鉴定及其对 (Sacc.) Nirenberg(1976)感染的表达诱导。

Genome-Wide Identification of a Maize Chitinase Gene Family and the Induction of Its Expression by (Sacc.) Nirenberg (1976) Infection.

机构信息

Departamento de Biotecnología Agrícola, Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional (CIIDIR), Unidad Sinaloa, Instituto Politécnico Nacional, Guasave 81049, Sinaloa, Mexico.

CONAHCYT-Departamento de Biotecnología Agrícola, Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional (CIIDIR), Unidad Sinaloa, Instituto Politécnico Nacional, Guasave 81049, Sinaloa, Mexico.

出版信息

Genes (Basel). 2024 Aug 17;15(8):1087. doi: 10.3390/genes15081087.

Abstract

Maize chitinases are involved in chitin hydrolysis. Chitinases are distributed across various organisms including animals, plants, and fungi and are grouped into different glycosyl hydrolase families and classes, depending on protein structure. However, many chitinase functions and their interactions with other plant proteins remain unknown. The economic importance of maize ( L.) makes it relevant for studying the function of plant chitinases and their biological roles. This work aims to identify chitinase genes in the maize genome to study their gene structure, family/class classification, -related elements, and gene expression under biotic stress, such as infection. Thirty-nine chitinase genes were identified and found to be distributed in three glycosyl hydrolase (GH) families (18, 19 and 20). Likewise, the conserved domains and motifs were identified in each GH family member. The identified -regulatory elements are involved in plant development, hormone response, defense, and abiotic stress response. Chitinase protein-interaction network analysis predicted that they interact mainly with cell wall proteins. qRT-PCR analysis confirmed in silico data showing that ten different maize chitinase genes are induced in the presence of , and that they could have several roles in pathogen infection depending on chitinase structure and cell wall localization.

摘要

玉米几丁质酶参与几丁质水解。几丁质酶分布在包括动物、植物和真菌在内的各种生物体中,并根据蛋白质结构分为不同的糖苷水解酶家族和类别。然而,许多几丁质酶的功能及其与其他植物蛋白的相互作用仍然未知。玉米(L.)具有重要的经济价值,因此研究植物几丁质酶的功能及其生物学作用具有重要意义。本研究旨在鉴定玉米基因组中的几丁质酶基因,研究其基因结构、家族/类分类、相关元件以及在生物胁迫(如真菌感染)下的基因表达。鉴定到 39 个几丁质酶基因,它们分布在三个糖苷水解酶(GH)家族(18、19 和 20)中。同样,在每个 GH 家族成员中鉴定到保守结构域和基序。鉴定到的 -调控元件参与植物发育、激素响应、防御和非生物胁迫响应。几丁质酶蛋白相互作用网络分析预测,它们主要与细胞壁蛋白相互作用。qRT-PCR 分析证实了基于计算机的数据,表明在 存在的情况下,10 个不同的玉米几丁质酶基因被诱导,并且它们在病原体感染中可能具有多种作用,这取决于几丁质酶结构和细胞壁定位。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/743b/11353892/21fda719765e/genes-15-01087-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索