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全基因组分析.中的转录因子基因。

Genome-Wide Analysis of Transcription Factor Genes in .

机构信息

School of Life Sciences, Key Laboratory of Yunnan for Biomass Energy and Biotechnology of Environment, Yunnan Normal University, Kunming 650500, China.

The Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China.

出版信息

Int J Mol Sci. 2022 Feb 14;23(4):2089. doi: 10.3390/ijms23042089.

Abstract

The gene family comprises plant-specific transcription factors that control cell proliferation and differentiation during growth and development in many plant species. However, to date, no studies of the LBD gene family in have been reported. In this study, a genome-wide analysis of LBD genes was performed in and 24 genes were identified. The genes were classified into two classes (I and II) based on phylogenetic relationships and motif structure. Subcellular localization analysis for DcaLBD6 and DcaLBD18 from class I and DcaLBD37 and DcaLBD41 from class II revealed that the proteins were localized in the nucleus. Transient expression analysis of DcaLBD6, DcaLBD18, DcaLBD37, and DcaLBD41 indicated that class I and class II members have opposite roles in regulating () expression. genes showed diverse expression patterns in response to different phytohormone treatments. Heat maps revealed diverse patterns of gene expression in different organs. These results lay the foundation for further detailed studies of the gene family in .

摘要

该基因家族包含植物特异性转录因子,这些转录因子在许多植物物种的生长和发育过程中控制细胞增殖和分化。然而,迄今为止,尚未有关于 中的 LBD 基因家族的研究报告。在这项研究中,对 中的 LBD 基因进行了全基因组分析,鉴定出 24 个基因。这些基因根据系统发育关系和基序结构分为两类(I 和 II)。对来自 I 类的 DcaLBD6 和 DcaLBD18 以及来自 II 类的 DcaLBD37 和 DcaLBD41 的亚细胞定位分析表明,这些蛋白质定位于细胞核中。对 DcaLBD6、DcaLBD18、DcaLBD37 和 DcaLBD41 的瞬时表达分析表明,I 类和 II 类成员在调节 ()表达方面发挥着相反的作用。 基因对不同的植物激素处理表现出不同的表达模式。热图显示了不同器官中 基因表达的不同模式。这些结果为进一步深入研究 中的 基因家族奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5f9/8877895/ae056fc7a853/ijms-23-02089-g001.jpg

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