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抗菌药物耐药性与新一代测序技术的作用

Antimicrobial Resistance and the Role of Next-Generation Sequencing.

作者信息

Andrews Christine B, Herzlinger Michael I, Moss Steven F

机构信息

Division of Pediatric Gastroenterology, Nutrition, and Liver Diseases, Hasbro Children's Hospital, Providence, Rhode Island.

Division of Gastroenterology, Warren Alpert Medical School of Brown University, Providence, Rhode Island.

出版信息

Gastroenterol Hepatol (N Y). 2024 Aug;20(8):469-476.

Abstract

infection affects over half of the world's population and is a global health concern because it contributes to chronic and fatal gastrointestinal disorders, including peptic ulcer disease and gastric cancer. The escalating prevalence of antibiotic-resistant strains of necessitates a change in management. The conventional strategy of empiric-based treatments is becoming increasingly ineffective in both adult and pediatric populations; rates of eradication to common first-line regimens remain suboptimal and continue to decline. Culture-based susceptibility testing for has been underutilized and challenging to incorporate into practice. Next-generation sequencing (NGS), which can identify the genetic biomarkers that predict antimicrobial resistance and susceptibility patterns, offers a promising alternative. NGS may enable clinicians to tailor individual treatment regimens and contribute to epidemiologic surveillance across populations. As NGS technology advances and becomes more accessible, its integration into routine clinical practice holds the potential to transform management strategies and improve patient outcomes. This article reviews the literature describing antimicrobial resistance patterns in adult and pediatric practice in the United States and provides practical guidance on the current role of NGS in the management of

摘要

感染影响着全球半数以上的人口,是一个全球健康问题,因为它会导致慢性和致命的胃肠道疾病,包括消化性溃疡病和胃癌。抗生素耐药菌株的患病率不断上升,这就需要改变治疗方法。基于经验的传统治疗策略在成人和儿童人群中越来越无效;常见一线治疗方案的根除率仍然不理想,并且还在继续下降。基于培养的药敏试验在[此处原文缺失相关病菌名称]方面未得到充分利用,且难以纳入实践。下一代测序(NGS)能够识别预测抗菌药物耐药性和药敏模式的基因生物标志物,提供了一种很有前景的替代方法。NGS可能使临床医生能够制定个性化的治疗方案,并有助于对人群进行流行病学监测。随着NGS技术的进步和更易于获取,将其整合到常规临床实践中有可能改变[此处原文缺失相关病菌名称]的治疗策略并改善患者预后。本文回顾了描述美国成人和儿童实践中抗菌药物耐药模式的文献,并就NGS在[此处原文缺失相关病菌名称]治疗中的当前作用提供实用指南。

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引用本文的文献

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J Pediatr Gastroenterol Nutr. 2023 Nov 1;77(5):623-627. doi: 10.1097/MPG.0000000000003908. Epub 2023 Aug 7.
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Helicobacter pylori Antimicrobial Resistance in a Pediatric Population From the New England Region of the United States.
Clin Gastroenterol Hepatol. 2023 Dec;21(13):3458-3460.e2. doi: 10.1016/j.cgh.2023.02.026. Epub 2023 Mar 3.
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Tailored Treatment Based on Helicobacter pylori Genetic Markers of Resistance Is Associated With Higher Eradication Success.
Am J Gastroenterol. 2023 Feb 1;118(2):360-363. doi: 10.14309/ajg.0000000000002085. Epub 2022 Oct 11.
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Front Pharmacol. 2022 Sep 8;13:908202. doi: 10.3389/fphar.2022.908202. eCollection 2022.
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Empirical vs. Susceptibility-Guided Treatment of Infection: A Systematic Review and Meta-Analysis.
Front Microbiol. 2022 Jun 14;13:913436. doi: 10.3389/fmicb.2022.913436. eCollection 2022.
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culture: from bench to bedside.
Ann Gastroenterol. 2022 May-Jun;35(3):243-248. doi: 10.20524/aog.2022.0703. Epub 2022 Mar 25.
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Helicobacter pylori Antibiotic Resistance in the United States Between 2011 and 2021: A Systematic Review and Meta-Analysis.
Am J Gastroenterol. 2022 Aug 1;117(8):1221-1230. doi: 10.14309/ajg.0000000000001828. Epub 2022 May 5.

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