Zhang Zhaoxu, Li Yanjie, Cao Yue, Wang Yu, Guo Xuchao, Hao Xia
College of Information Science and Engineering, Shandong Agricultural University, Taian, 271018, Shandong Province, China.
Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, Zhejiang Province, China.
Plant Phenomics. 2024 Aug 28;6:0228. doi: 10.34133/plantphenomics.0228. eCollection 2024.
The new shoot density of slash pine serves as a vital indicator for assessing its growth and photosynthetic capacity, while the number of new shoots offers an intuitive reflection of this density. With deep learning methods becoming increasingly popular, automated counting of new shoots has greatly improved in recent years but is still limited by tedious and expensive data collection and labeling. To resolve these issues, this paper proposes a semi-supervised counting network (MTSC-Net) for estimating the number of slash pine new shoots. First, based on the mean-teacher framework, we introduce the improved VGG19 to extract multiscale new shoot features. Second, to connect local new shoot feature information with global channel features, attention feature fusion module is introduced to achieve effective feature fusion. Finally, the new shoot density map and density probability distribution are processed in a fine-grained manner through multiscale dilated convolution of the regression head and classification head. In addition, a masked image modeling strategy is introduced to encourage the contextual understanding of global new shoot features and improve the counting performance. The experimental results show that MTSC-Net outperforms other semi-supervised counting models with labeled percentages ranging from 5% to 50%. When the labeled percentage is 5%, the mean absolute error and root mean square error are 17.71 and 25.49, respectively. These findings demonstrate that our work can be used as an efficient semi-supervised counting method to provide automated support for tree breeding and genetic utilization.
湿地松新梢密度是评估其生长和光合能力的重要指标,而新梢数量则直观反映了这种密度。随着深度学习方法日益普及,近年来新梢的自动计数有了很大改进,但仍受繁琐且昂贵的数据收集和标注限制。为解决这些问题,本文提出一种用于估计湿地松新梢数量的半监督计数网络(MTSC-Net)。首先,基于均值教师框架,引入改进的VGG19来提取多尺度新梢特征。其次,为将局部新梢特征信息与全局通道特征相连接,引入注意力特征融合模块以实现有效的特征融合。最后,通过回归头和分类头的多尺度扩张卷积对新梢密度图和密度概率分布进行细粒度处理。此外,引入掩码图像建模策略以促进对全局新梢特征的上下文理解并提高计数性能。实验结果表明,MTSC-Net在标注百分比从5%到50%的情况下优于其他半监督计数模型。当标注百分比为5%时,平均绝对误差和均方根误差分别为17.71和25.49。这些发现表明,我们的工作可作为一种高效的半监督计数方法,为树木育种和遗传利用提供自动化支持。