Pak J Biol Sci. 2024 Jun;27(7):373-379. doi: 10.3923/pjbs.2024.373.379.
<b>Background and Objective:</b> The presence of Asian small-clawed otters (<i>Aonyx cinereus</i>) in West Sumatra has been reported from ecological data in the form of footprints and feces, while its genetic information has not been reported yet. This genetic information needs to be reported along with the determination of <i>A. cinereus</i> as a vulnerable species and is experiencing population decline by the International Union for Conservation of Nature (IUCN). This study aimed to determine the phylogenetic relationship of <i>A. cinereus</i> found in West Sumatra with other regions. <b>Materials and Methods:</b> The samples used were <i>A. cinereus</i> stool collected from several wetland locations in West Sumatra. <i>Aonyx cinereus</i> DNA was extracted from stool samples following the QIAamp Fast DNA Stool Mini Kit protocol (Qiagen). Amplification was performed using the CO1 gene. The IQTree was used to provide phylogenetic information on <i>A. cinereus</i> and MEGA 7 was used to determine the uncorrected genetic distance of <i>A. cinereus</i>. <b>Results:</b> <i>Aonyx cinereus</i> clustered to form three sub-clusters namely <i>A. cinereus</i> Sundaland, Laos lineage and unknown lineage. <i>Aonyx cinereus</i> Sundaland consists of <i>A. cinereus</i> West Sumatra and <i>A. cinereus</i> Sarawak, Malaysia which are closely related with a genetic distance of 0.68%. Moreover, compared to <i>A. cinereus</i> from unknown lineage (including Captive Copenhagen Zoo) and Laos lineage, <i>A. cinereus</i> of West Sumatra had a genetic distance of 0.68-1.20 and 4.18%, respectively. <b>Conclusion:</b> Wetland conversion and the role of humans have influenced the obstacle to connectivity among populations that cause genetic variation.
西苏门答腊已经有关于亚洲小爪水獭(Aonyx cinereus)的生态数据报告,包括足迹和粪便,但尚未有关于其遗传信息的报道。由于亚洲小爪水獭被国际自然保护联盟(IUCN)列为易危物种且其数量正在减少,因此需要报告其遗传信息。本研究旨在确定西苏门答腊发现的亚洲小爪水獭与其他地区的亲缘关系。材料与方法:本研究使用的样本为从西苏门答腊几个湿地地点采集的亚洲小爪水獭粪便。按照 QIAamp Fast DNA Stool Mini Kit 试剂盒(Qiagen)的方案从粪便样本中提取 Aonyx cinereus DNA。使用 CO1 基因进行扩增。IQTree 用于提供亚洲小爪水獭的系统发育信息,MEGA 7 用于确定亚洲小爪水獭的未校正遗传距离。结果:亚洲小爪水獭聚集成三个亚群,分别为亚洲小爪水獭巽他群岛群、老挝血统和未知血统。亚洲小爪水獭巽他群岛群由西苏门答腊亚洲小爪水獭和马来西亚沙捞越亚洲小爪水獭组成,它们与遗传距离为 0.68%的亲缘关系最为密切。此外,与未知血统(包括哥本哈根动物园圈养种群)和老挝血统的亚洲小爪水獭相比,西苏门答腊亚洲小爪水獭的遗传距离分别为 0.68-1.20%和 4.18%。结论:湿地转化和人类的作用影响了种群之间的连通性障碍,导致了遗传变异。