Department of Biology, Agriculture and Food Sciences, Institute of Biosciences and Bioresources, CNR, Napoli, Italy.
Neurofarba Department, Pharmaceutical and Nutraceutical Section, University of Florence, Sesto Fiorentino, Firenze, italy.
Enzymes. 2024;55:121-142. doi: 10.1016/bs.enz.2024.05.003. Epub 2024 Jun 1.
Recent research has identified a novel class of carbonic anhydrases (CAs), designated ι-CA, predominantly found in marine diatoms, eukaryotic algae, cyanobacteria, bacteria, and archaea genomes. This class has garnered attention owing to its unique biochemical properties and evolutionary significance. Through bioinformatic analyses, LCIP63, a protein initially annotated with an unknown function, was identified as a potential ι-CA in the marine diatom Thalassiosira pseudonana. Subsequent biochemical characterization revealed that LCIP63 has CA activity and its preference for manganese ions over zinc, indicative of evolutionary adaptation to marine environments. Further exploration of bacterial ι-CAs, exemplified by Burkholderia territorii ι-CA (BteCAι), demonstrated catalytic efficiency and sensitivity to sulfonamide and inorganic anion inhibitors, the classical CA inhibitors (CAIs). The classification of ι-CAs into two variant types based on their sequences, distinguished by the COG4875 and COG4337 domains, marks a significant advancement in our understanding of these enzymes. Structural analyses of COG4337 ι-CAs from eukaryotic microalgae and cyanobacteria thereafter revealed a distinctive structural arrangement and a novel catalytic mechanism involving specific residues facilitating CO hydration in the absence of metal ion cofactors, deviating from canonical CA behavior. These findings underscore the biochemical diversity within the ι-CA class and highlight its potential as a target for novel antimicrobial agents. Overall, the elucidation of ι-CA properties and mechanisms advances our knowledge of carbon metabolism in diverse organisms and underscores the complexity of CA evolution and function.
最近的研究确定了一类新型碳酸酐酶(CAs),命名为 ι-CA,主要存在于海洋硅藻、真核藻类、蓝细菌、细菌和古菌基因组中。由于其独特的生化特性和进化意义,该类 CA 引起了广泛关注。通过生物信息学分析,最初被注释为未知功能的 LCIP63 蛋白被鉴定为海洋硅藻拟菱形藻中的一种潜在的 ι-CA。随后的生化特性研究表明,LCIP63 具有 CA 活性,并且优先选择锰离子而不是锌离子,这表明其进化适应了海洋环境。对细菌 ι-CA 的进一步探索,以 Burkholderia territorii ι-CA(BteCAι)为例,展示了其对磺酰胺和无机阴离子抑制剂(经典 CA 抑制剂,CAIs)的催化效率和敏感性。根据序列将 ι-CAs 分为两种变体类型,以 COG4875 和 COG4337 结构域为区分标志,这标志着我们对这些酶的理解取得了重大进展。随后对真核微藻和蓝细菌的 COG4337 ι-CA 的结构分析揭示了一种独特的结构排列和新颖的催化机制,涉及特定残基,在没有金属离子辅因子的情况下促进 CO 水合作用,偏离了典型的 CA 行为。这些发现强调了 ι-CA 类别的生化多样性,并突出了其作为新型抗菌剂靶标的潜力。总的来说,阐明 ι-CA 的性质和机制有助于我们了解不同生物体内的碳代谢,同时也强调了 CA 进化和功能的复杂性。