通过PacBio测序产生的菌株ASE2和ASE4的完整基因组序列。
Complete genome sequences of strains ASE2 and ASE4 generated by PacBio sequencing.
作者信息
Tran Thao D, Lee SangIn, Hnasko Robert, McGarvey Jeffery A
机构信息
U.S. Department of Agriculture, Foodborne Toxin Detection and Prevention Research Unit, Agricultural Research Service, Albany, California, USA.
U.S. Department of Agriculture, Produce Safety and Microbiology Research Unit, Agricultural Research Service, Albany, California, USA.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0066024. doi: 10.1128/mra.00660-24. Epub 2024 Sep 4.
Abstract
strains ASE2 and ASE4 were isolated from the soil of a lettuce farm in Salinas, California, in 2020. Their complete genome sequences were generated by the PacBio Sequel II platform. They both consist of a single circular chromosome without plasmids.
摘要
菌株ASE2和ASE4于2020年从加利福尼亚州萨利纳斯一个生菜农场的土壤中分离出来。它们的完整基因组序列由PacBio Sequel II平台生成。它们都由一条无质粒的单一环状染色体组成。
相似文献
1
Complete genome sequences of strains ASE2 and ASE4 generated by PacBio sequencing.通过PacBio测序产生的菌株ASE2和ASE4的完整基因组序列。
Microbiol Resour Announc. 2024 Oct 10;13(10):e0066024. doi: 10.1128/mra.00660-24. Epub 2024 Sep 4.
2
Complete genome sequence of ASE1 generated by PacBio sequencing.通过PacBio测序生成的ASE1完整基因组序列。
Microbiol Resour Announc. 2024 Mar 12;13(3):e0100023. doi: 10.1128/MRA.01000-23. Epub 2024 Feb 14.
3
Molecular characteristics and comparative genomics analysis of a clinical with a resistance plasmid.一株携带耐药质粒临床菌株的分子特征及比较基因组学分析
Infect Drug Resist. 2018 Nov 5;11:2159-2167. doi: 10.2147/IDR.S180254. eCollection 2018.
4
Complete genome sequence of Enterococcus durans KLDS6.0930, a strain with probiotic properties.具有益生菌特性的耐久肠球菌KLDS6.0930的全基因组序列
J Biotechnol. 2016 Jan 10;217:49-50. doi: 10.1016/j.jbiotec.2015.11.012. Epub 2015 Nov 23.
5
Complete genome sequence of BST19, a soil isolate with potential anti-microbial properties using PacBio sequencing.利用PacBio测序技术对具有潜在抗菌特性的土壤分离菌株BST19进行全基因组测序
Microbiol Resour Announc. 2024 Oct 10;13(10):e0039624. doi: 10.1128/mra.00396-24. Epub 2024 Aug 23.
6
Pacbio sequencing of copper-tolerant Xanthomonas citri reveals presence of a chimeric plasmid structure and provides insights into reassortment and shuffling of transcription activator-like effectors among X. citri strains.Pacbio 测序铜耐受柑橘黄单胞菌揭示嵌合质粒结构的存在，并提供了柑橘黄单胞菌菌株之间转录激活子样效应物重排和重组的见解。
BMC Genomics. 2018 Jan 4;19(1):16. doi: 10.1186/s12864-017-4408-9.
7
Sequence Analysis of IncA/C and IncI1 Plasmids Isolated from Multidrug-Resistant Salmonella Newport Using Single-Molecule Real-Time Sequencing.使用单分子实时测序对从多重耐药性纽波特沙门氏菌中分离出的IncA/C和IncI1质粒进行序列分析。
Foodborne Pathog Dis. 2018 Jun;15(6):361-371. doi: 10.1089/fpd.2017.2385. Epub 2018 Apr 5.
8
PacBio But Not Illumina Technology Can Achieve Fast, Accurate and Complete Closure of the High GC, Complex Two-Chromosome Genome.PacBio技术而非Illumina技术能够实现对高GC含量、复杂的双染色体基因组的快速、准确且完整的封闭。
Front Microbiol. 2017 Aug 2;8:1448. doi: 10.3389/fmicb.2017.01448. eCollection 2017.
9
Genome sequencing and analysis of VJH504 reveal biocontrol mechanism against cucumber wilt.VJH504的基因组测序与分析揭示了其对黄瓜枯萎病的生物防治机制。
Front Microbiol. 2023 Oct 12;14:1279695. doi: 10.3389/fmicb.2023.1279695. eCollection 2023.
10
First report of multiresistance gene cfr in Enterococcus species casseliflavus and gallinarum of swine origin.首次报告猪源鹑鸡肠球菌和黄色肠球菌携带多药耐药基因 cfr。
Vet Microbiol. 2014 Jun 4;170(3-4):352-7. doi: 10.1016/j.vetmic.2014.02.037. Epub 2014 Mar 15.
本文引用的文献
1
Complete genome sequence of ASE1 generated by PacBio sequencing.通过PacBio测序生成的ASE1完整基因组序列。
Microbiol Resour Announc. 2024 Mar 12;13(3):e0100023. doi: 10.1128/MRA.01000-23. Epub 2024 Feb 14.
2
Infection: A Review of Clinical Features and Treatment.感染：临床特征与治疗综述
Infect Drug Resist. 2023 Jan 20;16:363-368. doi: 10.2147/IDR.S398739. eCollection 2023.
3
Cascading effects of composts and cover crops on soil chemistry, bacterial communities and the survival of foodborne pathogens.堆肥和覆盖作物对土壤化学、细菌群落和食源性病原体存活的级联效应。
J Appl Microbiol. 2021 Oct;131(4):1564-1577. doi: 10.1111/jam.15054. Epub 2021 Apr 6.
4
Clinical management of non-faecium non-faecalis vancomycin-resistant enterococci infection. Focus on Enterococcus gallinarum and Enterococcus casseliflavus/flavescens.非粪肠球菌和非屎肠球菌耐万古霉素肠球菌感染的临床管理。重点关注鹑鸡肠球菌和格氏/微黄肠球菌。
J Infect Chemother. 2018 Apr;24(4):237-246. doi: 10.1016/j.jiac.2018.01.001. Epub 2018 Feb 1.
5
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus.用于空肠弯曲菌、拉氏弯曲菌、乌普萨拉弯曲菌和瑞士弯曲菌的扩展多位点序列分型系统。
J Clin Microbiol. 2005 May;43(5):2315-29. doi: 10.1128/JCM.43.5.2315-2329.2005.
Zotero 插件