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一个患有非综合征性听力损失的毛里塔尼亚家族中PJVK基因的剪接改变变体。

Splice-altering variant of PJVK gene in a Mauritanian family with non-syndromic hearing impairment.

作者信息

Salame Malak, Bonnet Crystel, Singh-Estivalet Amrit, Brahim Selma Mohamed, Roux Solene, Boussaty Ely Cheikh, Hadrami Mouna, Hamed Cheikh Tijani, Sidi Abdellahi M'hamed, Veten Fatimetou, Petit Christine, Houmeida Ahmed

机构信息

Unité de Recherche Sur Les Biomarqueurs Dans La Population Mauritanienne, UN-FST, Nouakchott, Mauritania.

Institut d'Hépato-Virologie, Nouakchott, Mauritania.

出版信息

J Appl Genet. 2024 Sep 4. doi: 10.1007/s13353-024-00903-x.

DOI:10.1007/s13353-024-00903-x
PMID:39230647
Abstract

PJVK gene was recently shown to create hypervulnerability to sound in humans and was the first human gene implicated in non-syndromic hearing impairment due to neural defect. Targeted next-generation sequencing of over 150 known deafness genes was performed in the proband. Sanger sequencing was used to validate the PJVK variant and confirm familial segregation of the disease. A minigene-based assay has been performed to assess the impact of the variant on splicing. We identified a novel c.550-6A > G acceptor splice-site variant in the PJVK gene in the homozygous state in a Mauritanian child with severe to profound congenital deafness. The substitution was located in intron 4. The effect of the variation was demonstrated by a minigene assay which showed that the variation, an insertion of an additional 5 bp, created a new splice site resulting in the appearance of a premature stop codon (p.Phe184Tyrfs*26) and likely a truncated protein. This result constitutes a new splice-site variant report in the PJVK gene leading to DFNB59 type associated with autosomal recessive non-syndromic hearing impairment (ARNSHI).

摘要

最近研究表明,PJVK基因会使人对声音产生高度易损性,它是首个因神经缺陷导致非综合征性听力损失的人类基因。对先证者进行了150多个已知耳聋基因的靶向二代测序。采用桑格测序法验证PJVK基因变异,并确认该疾病的家族遗传情况。已进行基于小基因的分析,以评估该变异对剪接的影响。我们在一名患有重度至极重度先天性耳聋的毛里塔尼亚儿童中,发现了PJVK基因纯合状态下一个新的c.550-6A>G受体剪接位点变异。该替换位于第4内含子。小基因分析证实了该变异的影响,结果显示该变异(额外插入5个碱基对)产生了一个新的剪接位点,导致出现提前终止密码子(p.Phe184Tyrfs*26),可能产生截短蛋白。这一结果构成了PJVK基因一个新的剪接位点变异报告,导致与常染色体隐性非综合征性听力损失(ARNSHI)相关的DFNB59型。

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本文引用的文献

1
Identification a novel pathogenic LRTOMT mutation in Mauritanian families with nonsyndromic deafness.在非综合征性耳聋的毛里塔尼亚家族中鉴定出一种新型致病性 LRTOMT 突变。
Eur Arch Otorhinolaryngol. 2023 Sep;280(9):4057-4063. doi: 10.1007/s00405-023-07907-z. Epub 2023 Mar 16.
2
Novel Pathogenic Variants in , the Gene Encoding Pejvakin, in Subjects with Autosomal Recessive Non-Syndromic Hearing Impairment and Auditory Neuropathy Spectrum Disorder.编码 Pejvakin 的 基因中的新型致病性变异与常染色体隐性非综合征性听力损失和听神经病谱系障碍有关。
Genes (Basel). 2022 Jan 15;13(1):149. doi: 10.3390/genes13010149.
3
Genetic etiology of non-syndromic hearing loss in Europe.
欧洲非综合征性听力损失的遗传病因
Hum Genet. 2022 Apr;141(3-4):683-696. doi: 10.1007/s00439-021-02425-6. Epub 2022 Jan 19.
4
A splice-site variant (c.3289-1G>T) in OTOF underlies profound hearing loss in a Pakistani kindred.一个 splice-site 变异(c.3289-1G>T)位于 otof 基因中,导致一个巴基斯坦家系的人出现重度听力损失。
BMC Med Genomics. 2021 Jan 4;14(1):2. doi: 10.1186/s12920-020-00859-x.
5
Whole exome sequencing identified mutations causing hearing loss in five consanguineous Pakistani families.全外显子组测序鉴定了五个巴基斯坦近亲家族致聋的突变。
BMC Med Genet. 2020 Jul 18;21(1):151. doi: 10.1186/s12881-020-01087-x.
6
Premature termination codons in the gene cause reduced local mRNA synthesis.基因中的提前终止密码子导致局部 mRNA 合成减少。
Proc Natl Acad Sci U S A. 2020 Jul 14;117(28):16456-16464. doi: 10.1073/pnas.1910456117. Epub 2020 Jul 2.
7
Sequence variants in genes causing nonsyndromic hearing loss in a Pakistani cohort.导致巴基斯坦队列中非综合征性听力损失的基因中的序列变异。
Mol Genet Genomic Med. 2019 Sep;7(9):e917. doi: 10.1002/mgg3.917. Epub 2019 Aug 6.
8
Pejvakin-mediated pexophagy protects auditory hair cells against noise-induced damage.佩贾金介导的pexophagy 可保护听觉毛细胞免受噪声损伤。
Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):8010-8017. doi: 10.1073/pnas.1821844116. Epub 2019 Apr 1.
9
Global genetic insight contributed by consanguineous Pakistani families segregating hearing loss.巴基斯坦近亲家族遗传性听力损失的全球遗传学研究。
Hum Mutat. 2019 Jan;40(1):53-72. doi: 10.1002/humu.23666. Epub 2018 Nov 18.
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