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新饮用水基因组目录鉴定出适应消毒饮用水系统的全球分布细菌属。

New Drinking Water Genome Catalog Identifies a Globally Distributed Bacterial Genus Adapted to Disinfected Drinking Water Systems.

机构信息

School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.

Department of Environmental Microbiology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dubendorf CH-8600, Switzerland.

出版信息

Environ Sci Technol. 2024 Sep 17;58(37):16475-16487. doi: 10.1021/acs.est.4c05086. Epub 2024 Sep 5.

Abstract

Genome-resolved insights into the structure and function of the drinking water microbiome can advance the effective management of drinking water quality. To enable this, we constructed and curated thousands of metagenome-assembled and isolate genomes from drinking water distribution systems globally to develop a Drinking Water Genome Catalog (DWGC). The current DWGC disproportionately represents disinfected drinking water systems due to a paucity of metagenomes from nondisinfected systems. Using the DWGC, we identify core genera of the drinking water microbiome including a genus (UBA4765) within the order Rhizobiales that is frequently detected and highly abundant in disinfected drinking water systems. We demonstrate that this genus has been widely detected but incorrectly classified in previous amplicon sequencing-based investigations of the drinking water microbiome. Further, we show that a single genome variant (genomovar) within this genus is detected in 75% of drinking water systems included in this study. We propose a name for this uncultured bacterium as "" and describe the genus as "" (endorsed by SeqCode). Metabolic annotation and modeling-based predictions indicate that this bacterium is capable of necrotrophic growth, is able to metabolize halogenated compounds, proliferates in a biofilm-based environment, and shows clear indications of disinfection-mediated selection.

摘要

对饮用水微生物组的结构和功能进行基因组解析,可以促进饮用水质量的有效管理。为此,我们构建并整理了来自全球饮用水分配系统的数千个宏基因组组装和分离基因组,以开发饮用水基因组目录 (DWGC)。由于非消毒系统的宏基因组数量很少,目前的 DWGC 不成比例地代表了消毒后的饮用水系统。利用 DWGC,我们确定了饮用水微生物组的核心属,包括根瘤菌目中的一个属(UBA4765),该属在消毒后的饮用水系统中经常被检测到且丰度很高。我们证明,该属在以前基于扩增子测序的饮用水微生物组研究中被广泛检测到,但分类错误。此外,我们还表明,在本研究中包含的 75%的饮用水系统中都检测到了该属内的单个基因组变体 (genomovar)。我们提议将这种未培养的细菌命名为“未命名属 4765”,并将该属描述为“未命名属 4765 科”(SeqCode 认可)。代谢注释和基于模型的预测表明,这种细菌能够进行坏死生长,能够代谢卤代化合物,在生物膜为基础的环境中增殖,并显示出明显的消毒介导选择迹象。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f9a/11411728/f8a33a1024b4/es4c05086_0001.jpg

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