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通过半理性诱变提高来自[具体来源未给出]的苯丙氨酸氨基变位酶对肉桂酸酯生物催化胺化反应的区域选择性。

Improving regioselectivity of phenylalanine aminomutase from by semi-rational mutagenesis for the biocatalytic amination of cinnamates.

作者信息

Tang Tao, Wang Miao, Zhang Yunyun, Chen Yijun

机构信息

Laboratory of Chemical Biology and State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, Jiangsu, China.

出版信息

Front Bioeng Biotechnol. 2024 Aug 22;12:1417962. doi: 10.3389/fbioe.2024.1417962. eCollection 2024.

Abstract

The occupancy of the binding pocket by the substrate ultimately determines the outcome of enzyme catalysis. Previous engineering and substrate scope of phenylalanine aminomutase from (TcPAM) has generated valuable knowledge about the regioselectivity with biocatalytic potentials for the preparation of α- and β-phenylalanine and their derivatives. However, the significantly different regioselectivity during the amination of cinnamates by TcPAM is not fully understood. In this study, we take a reconstruction approach to change the whole binding pocket of TcPAM for probing the factors affecting the regioselectivity, resulting in variant C107S/Q319M/I431V reaching a 25.5-fold enhancement of the β/α product ratio toward -cinnamate acid. Furthermore, when substituted cinnamates were used as substrates, the regioselectivity was strongly correlated with various changes in the binding pocket, and value-added 2-Cl-α-Phe (100% α-selectivity) and 4-CH-β-Phe (98% β-selectivity) were individually verified by the mutants L104A and Q319M at a preparative scale, exemplifying the application feasibility of our engineering strategy. The present study uncovered the cooperative connection between aromatic binding and carboxylate binding to affect the regioselectivity, which provides new insights into the determinants of the regioselectivity possessed by TcPAM and paves the way for its biocatalytic applications on phenylalanine derivatives.

摘要

底物对结合口袋的占据最终决定了酶催化的结果。先前对来自[具体来源未提及]的苯丙氨酸氨基变位酶(TcPAM)的工程改造和底物范围研究,已经产生了关于区域选择性的有价值知识,该酶具有用于制备α-和β-苯丙氨酸及其衍生物的生物催化潜力。然而,TcPAM对肉桂酸酯胺化过程中显著不同的区域选择性尚未完全理解。在本研究中,我们采用一种重构方法来改变TcPAM的整个结合口袋,以探究影响区域选择性的因素,结果变体C107S/Q319M/I431V对反式肉桂酸的β/α产物比率提高了25.5倍。此外,当使用取代肉桂酸酯作为底物时,区域选择性与结合口袋中的各种变化密切相关,并且突变体L104A和Q319M在制备规模上分别验证了增值产物2-氯-α-苯丙氨酸(100%α选择性)和4-甲基-β-苯丙氨酸(98%β选择性),例证了我们工程策略的应用可行性。本研究揭示了芳香族结合和羧酸盐结合之间的协同联系以影响区域选择性,这为TcPAM区域选择性的决定因素提供了新见解,并为其在苯丙氨酸衍生物的生物催化应用铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4022/11374720/dca1eca29dfc/fbioe-12-1417962-g001.jpg

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