Hong Jiwon, Jin Hyo Joon, Choi Mi Ran, Lim Darren Wan-Teck, Park Jong-Eun, Kim You-Sun, Lim Su Bin
Department of Biochemistry & Molecular Biology, Ajou University School of Medicine, Suwon 16499, Republic of Korea; Department of Biomedical Sciences, Graduate School of Ajou University, Suwon 16499, Republic of Korea.
Department of Biochemistry & Molecular Biology, Ajou University School of Medicine, Suwon 16499, Republic of Korea.
Biochim Biophys Acta Rev Cancer. 2024 Nov;1879(6):189178. doi: 10.1016/j.bbcan.2024.189178. Epub 2024 Sep 4.
The matrisome, a group of proteins constituting or interacting with the extracellular matrix (ECM), has garnered attention as a potent regulator of cancer progression. An increasing number of studies have focused on cancer matrisome utilizing diverse -omics approaches. Here, we present diverse patterns of matrisomal populations within cancer tissues, exploring recent -omics studies spanning different '-omics' levels (epigenomics, genomics, transcriptomics, and proteomics), as well as newly developed sequencing techniques such as single-cell RNA sequencing and spatial transcriptomics. Some matrisome genes showed uniform patterns of upregulated or downregulated expression across various cancers, while others displayed different expression patterns according to the cancer types. This matrisomal dysregulation in cancer was further examined according to their originating cell type and spatial location in the tumor tissue. Experimental studies were also collected to demonstrate the identified roles of matrisome genes during cancer progression. Interestingly, many studies on cancer matrisome have suggested matrisome genes as effective biomarkers in cancer research. Although the specific mechanisms and clinical applications of cancer matrisome have not yet been fully elucidated, recent techniques and analyses on cancer matrisomics have emphasized their biological importance in cancer progression and their clinical implications in deciding the efficacy of cancer treatment.
基质组是一组构成细胞外基质(ECM)或与之相互作用的蛋白质,作为癌症进展的有力调节因子已受到关注。越来越多的研究利用各种组学方法聚焦于癌症基质组。在此,我们展示了癌症组织内基质组群体的多样模式,探讨了涵盖不同“组学”水平(表观基因组学、基因组学、转录组学和蛋白质组学)的近期组学研究,以及新开发的测序技术,如单细胞RNA测序和空间转录组学。一些基质组基因在各种癌症中呈现出上调或下调表达的一致模式,而其他基因则根据癌症类型表现出不同的表达模式。癌症中的这种基质组失调还根据其起源细胞类型和在肿瘤组织中的空间位置进行了进一步研究。还收集了实验研究来证明基质组基因在癌症进展过程中所确定的作用。有趣的是,许多关于癌症基质组的研究已表明基质组基因是癌症研究中的有效生物标志物。尽管癌症基质组的具体机制和临床应用尚未完全阐明,但近期关于癌症基质组学的技术和分析强调了它们在癌症进展中的生物学重要性以及在决定癌症治疗疗效方面的临床意义。