通过5S rRNA序列对硫杆菌属和硫微螺菌属进行系统发育分析。
Phylogenetic analysis of the genera Thiobacillus and Thiomicrospira by 5S rRNA sequences.
作者信息
Lane D J, Stahl D A, Olsen G J, Heller D J, Pace N R
出版信息
J Bacteriol. 1985 Jul;163(1):75-81. doi: 10.1128/jb.163.1.75-81.1985.
Abstract
5S rRNA nucleotide sequences from Thiobacillus neapolitanus, Thiobacillus ferrooxidans, Thiobacillus thiooxidans, Thiobacillus intermedius, Thiobacillus perometabolis, Thiobacillus thioparus, Thiobacillus versutus, Thiobacillus novellus, Thiobacillus acidophilus, Thiomicrospira pelophila, Thiomicrospira sp. strain L-12, and Acidiphilium cryptum were determined. A phylogenetic tree, based upon comparison of these and other related 5S rRNA sequences, is presented. The results place the thiobacilli, Thiomicrospira spp., and Acidiphilium spp. in the "purple photosynthetic" bacterial grouping which also includes the enteric, vibrio, pseudomonad, and other familiar eubacterial groups in addition to the purple photosynthetic bacteria. The genus Thiobacillus is not an evolutionarily coherent grouping but rather spans the full breadth of the purple photosynthetic bacteria.
摘要
测定了那不勒斯硫杆菌、氧化亚铁硫杆菌、氧化硫硫杆菌、中间硫杆菌、代谢性硫杆菌、排硫硫杆菌、多样硫杆菌、新硫杆菌、嗜酸硫杆菌、嗜油微螺菌、微螺菌属菌株L - 12以及嗜酸亚铁菌的5S rRNA核苷酸序列。基于这些序列与其他相关5S rRNA序列的比较，构建了系统发育树。结果表明，硫杆菌属、微螺菌属和嗜酸亚铁菌属属于“紫色光合”细菌类群，除了紫色光合细菌外，该类群还包括肠道菌、弧菌、假单胞菌以及其他常见的真细菌类群。硫杆菌属并非一个在进化上具有一致性的类群，而是涵盖了紫色光合细菌的整个范围。
相似文献
1
Phylogenetic analysis of the genera Thiobacillus and Thiomicrospira by 5S rRNA sequences.通过5S rRNA序列对硫杆菌属和硫微螺菌属进行系统发育分析。
J Bacteriol. 1985 Jul;163(1):75-81. doi: 10.1128/jb.163.1.75-81.1985.
2
Phylogeny and photosynthetic features of Thiobacillus acidophilus and related acidophilic bacteria: its transfer to the genus Acidiphilium as Acidiphilium acidophilum comb. nov.嗜酸硫杆菌及相关嗜酸细菌的系统发育和光合特性：将其重新分类为嗜酸嗜酸菌属（Acidiphilium acidophilum comb. nov.）
Int J Syst Bacteriol. 1998 Oct;48 Pt 4:1389-98. doi: 10.1099/00207713-48-4-1389.
3
Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: proposal for Thiomonas gen. nov.
Int J Syst Bacteriol. 1997 Apr;47(2):522-8. doi: 10.1099/00207713-47-2-522.
4
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments.硫微螺菌属物种的系统发育关系及其在深海热液喷口样品中通过16S rDNA片段变性梯度凝胶电泳进行的鉴定。
Arch Microbiol. 1995 Sep;164(3):165-72. doi: 10.1007/BF02529967.
5
Increased species diversity and extended habitat range of sulfur-oxidizing Thiomicrospira spp.硫氧化型硫微螺菌属物种的物种多样性增加及栖息地范围扩大
Appl Environ Microbiol. 1997 Oct;63(10):3789-96. doi: 10.1128/aem.63.10.3789-3796.1997.
6
Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus.硫氰酸副球菌新种，一种利用硫氰酸盐的兼性化能无机营养菌，以及将多变硫杆菌转移至副球菌属，命名为多变副球菌新组合，并对该属进行修订。
Microbiology (Reading). 1995 Jun;141 ( Pt 6):1469-1477. doi: 10.1099/13500872-141-6-1469.
7
Phylogenetic assessment of culture collection strains of Thiobacillus thioparus, and definitive 16S rRNA gene sequences for T. thioparus, T. denitrificans, and Halothiobacillus neapolitanus.硫杆菌属 Thiobacillus 培养物菌株的系统发育评估，以及硫杆菌属 Thiobacillus、脱氮硫杆菌属 Thionitrificans 和脱氮硫杆菌属 Halothiobacillus 的 16S rRNA 基因序列的明确鉴定。
Arch Microbiol. 2012 Mar;194(3):187-95. doi: 10.1007/s00203-011-0747-0. Epub 2011 Aug 21.
8
Characterization of the two rRNA gene operons present in Thiobacillus ferrooxidans.
FEBS Lett. 1989 Jan 2;242(2):439-43. doi: 10.1016/0014-5793(89)80518-6.
9
A Tn7-like transposon is present in the glmUS region of the obligately chemoautolithotrophic bacterium Thiobacillus ferrooxidans.一种类Tn7转座子存在于专性化能自养细菌氧化亚铁硫杆菌的glmUS区域。
J Bacteriol. 1998 Jun;180(11):3007-12. doi: 10.1128/JB.180.11.3007-3012.1998.
10
Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus.凯利嗜盐硫杆菌新种，一种从爱琴海浅水热液喷口分离出的嗜温、专性化能无机自养、硫氧化细菌，以及嗜盐硫杆菌属的修订描述。
Int J Syst Evol Microbiol. 2000 May;50 Pt 3:1229-1237. doi: 10.1099/00207713-50-3-1229.
引用本文的文献
1
Investigating eukaryotic and prokaryotic diversity and functional potential in the cold and alkaline ikaite columns in Greenland.研究格陵兰岛寒冷碱性柱星石中的真核生物和原核生物多样性及功能潜力。
Front Microbiol. 2024 Apr 9;15:1358787. doi: 10.3389/fmicb.2024.1358787. eCollection 2024.
2
Sulfur oxidation by Achromobacter xylosoxidans strain wsp05 reveals ecological widening over which thiotrophs are distributed.木糖氧化无色杆菌菌株wsp05的硫氧化揭示了硫营养菌分布的生态范围扩大。
World J Microbiol Biotechnol. 2017 Oct 3;33(10):192. doi: 10.1007/s11274-017-2359-6.
3
Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage.长期受酸性矿山排水影响的盐沼中异化亚硫酸盐还原酶基因（dsrAB）的多样性。
Appl Environ Microbiol. 2010 Jul;76(14):4819-28. doi: 10.1128/AEM.03006-09. Epub 2010 May 14.
4
Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry.炭疽芽孢杆菌分型噬菌体γ和樱桃的测序揭示了共同的起源。
J Bacteriol. 2006 May;188(9):3402-8. doi: 10.1128/JB.188.9.3402-3408.2006.
5
Direct 5S rRNA Assay for Monitoring Mixed-Culture Bioprocesses.直接 5S rRNA 检测法在混合培养生物工艺过程监测中的应用。
Appl Environ Microbiol. 1996 Jun;62(6):1969-76. doi: 10.1128/aem.62.6.1969-1976.1996.
6
Examination of Lipopolysaccharide (O-Antigen) Populations of Thiobacillus ferrooxidans from Two Mine Tailings.两种矿尾矿中铁氧化硫杆菌脂多糖（O 抗原）群体的研究。
Appl Environ Microbiol. 1993 May;59(5):1283-8. doi: 10.1128/aem.59.5.1283-1288.1993.
7
Specific Dot-Immunobinding Assay for Detection and Enumeration of Thiobacillus ferrooxidans.用于检测和计数氧化亚铁硫杆菌的特异性斑点免疫结合测定法。
Appl Environ Microbiol. 1989 Aug;55(8):2025-2029. doi: 10.1128/aem.55.8.2025-2029.1989.
8
A soxA gene, encoding a diheme cytochrome c, and a sox locus, essential for sulfur oxidation in a new sulfur lithotrophic bacterium.一个编码双血红素细胞色素c的soxA基因，以及一个对一种新型硫自养细菌中的硫氧化至关重要的sox基因座。
J Bacteriol. 2000 Aug;182(15):4278-87. doi: 10.1128/JB.182.15.4278-4287.2000.
9
Bacterial populations in samples of bioleached copper ore as revealed by analysis of DNA obtained before and after cultivation.通过对培养前后获得的DNA进行分析揭示的生物浸出铜矿石样品中的细菌种群。
Appl Environ Microbiol. 1996 Apr;62(4):1323-8. doi: 10.1128/aem.62.4.1323-1328.1996.
10
Molecular approaches to the identification of unculturable infectious agents.鉴定不可培养感染因子的分子方法。
Emerg Infect Dis. 1996 Jul-Sep;2(3):159-67. doi: 10.3201/eid0203.960301.
本文引用的文献
1
Analysis of hydrothermal vent-associated symbionts by ribosomal RNA sequences.通过核糖体RNA序列分析与热液喷口相关的共生体。
Science. 1984 Apr 27;224(4647):409-11. doi: 10.1126/science.224.4647.409.
2
Thermophilic iron-oxidizing bacteria found in copper leaching dumps.在铜浸出堆中发现的嗜热氧化铁细菌。
Appl Environ Microbiol. 1978 Sep;36(3):523-5. doi: 10.1128/aem.36.3.523-525.1978.
3
Symposium on metabolism of inorganic compounds. V. Comparative metabolism of inorganic sulfur compounds in microorganisms.无机化合物代谢研讨会。V. 微生物中无机硫化合物的比较代谢
Bacteriol Rev. 1962 Mar;26(1):67-94. doi: 10.1128/br.26.1.67-94.1962.
4
The thiobacilli.硫杆菌
Bacteriol Rev. 1957 Sep;21(3):195-213. doi: 10.1128/br.21.3.195-213.1957.
5
The phylogeny of purple bacteria: the alpha subdivision.紫色细菌的系统发育：α亚群
Syst Appl Microbiol. 1984;5:315-26. doi: 10.1016/s0723-2020(84)80034-x.
6
Heterotrophic bacteria from cultures of autotrophic Thiobacillus ferrooxidans: relationships as studied by means of deoxyribonucleic acid homology.来自自养型氧化亚铁硫杆菌培养物中的异养细菌：通过脱氧核糖核酸同源性研究其关系
J Bacteriol. 1980 Jul;143(1):448-54. doi: 10.1128/jb.143.1.448-454.1980.
7
Plasmid DNA in acidophilic, chemolithotrophic thiobacilli.嗜酸、化能自养硫杆菌中的质粒DNA。
Can J Microbiol. 1981 Aug;27(8):850-3. doi: 10.1139/m81-133.
8
Generalized structures of the 5S ribosomal RNAs.5S核糖体RNA的通用结构
Nucleic Acids Res. 1982 Nov 25;10(22):7323-44. doi: 10.1093/nar/10.22.7323.
9
Physiological characteristics of Thiomicrospira sp. Strain L-12 isolated from deep-sea hydrothermal vents.从深海热液喷口分离出的硫微螺菌属菌株L-12的生理特性。
J Bacteriol. 1982 Jan;149(1):161-5. doi: 10.1128/jb.149.1.161-165.1982.
10
Diversity in the routing and regulation of complex biochemical pathways as indicators of microbial relatedness.复杂生化途径的途径和调控中的多样性作为微生物亲缘关系的指标。
Crit Rev Microbiol. 1982 May;9(4):227-52. doi: 10.3109/10408418209104491.
Zotero 插件