Surgical Oncology, The Fifth People's Hospital of Ningxia, Shizuishan, China.
Department of Nephrology, Ningxia Medical University Generai Hospital, Yinchuan, China.
Medicine (Baltimore). 2024 Sep 6;103(36):e39464. doi: 10.1097/MD.0000000000039464.
To more accurately diagnose and treat patients with different subtypes of thyroid cancer, we constructed a diagnostic model related to the iodine metabolism of THCA subtypes. THCA expression profiles, corresponding clinicopathological information, and single-cell RNA-seq were downloaded from TCGA and GEO databases. Genes related to thyroid differentiation score were obtained by GSVA. Through logistic analyses, the diagnostic model was finally constructed. DCA curve, ROC curve, machine learning, and K-M analysis were used to verify the accuracy of the model. qRT-PCR was used to verify the expression of hub genes in vitro. There were 104 crossover genes between different TDS and THCA subtypes. Finally, 5 genes (ABAT, CHEK1, GPX3, NME5, and PRKCQ) that could independently predict the TDS subpopulation were obtained, and a diagnostic model was constructed. ROC, DCA, and RCS curves exhibited that the model has accurate prediction ability. K-M and subgroup analysis results showed that low model scores were strongly associated with poor PFI in THCA patients. The model score was significantly negatively correlated with T cell follicular helper. In addition, the diagnostic model was significantly negatively correlated with immune scores. Finally, the results of qRT-PCR corresponded with bioinformatics results. This diagnostic model has good diagnostic and prognostic value for THCA patients, and can be used as an independent prognostic indicator for THCA patients.
为了更准确地诊断和治疗不同亚型的甲状腺癌患者,我们构建了一个与 THCA 亚型碘代谢相关的诊断模型。从 TCGA 和 GEO 数据库中下载了 THCA 表达谱、相应的临床病理信息和单细胞 RNA-seq。通过 GSVA 获取与甲状腺分化评分相关的基因。通过逻辑分析,最终构建了诊断模型。DCA 曲线、ROC 曲线、机器学习和 K-M 分析用于验证模型的准确性。qRT-PCR 用于验证体外关键基因的表达。不同 TDS 和 THCA 亚型之间存在 104 个交叉基因。最终获得了 5 个(ABAT、CHEK1、GPX3、NME5 和 PRKCQ)可独立预测 TDS 亚群的基因,并构建了诊断模型。ROC、DCA 和 RCS 曲线表明该模型具有准确的预测能力。K-M 和亚组分析结果表明,模型评分低与 THCA 患者的 PFI 不良密切相关。模型评分与滤泡辅助性 T 细胞呈显著负相关。此外,诊断模型与免疫评分呈显著负相关。最后,qRT-PCR 的结果与生物信息学结果相呼应。该诊断模型对 THCA 患者具有良好的诊断和预后价值,可作为 THCA 患者的独立预后指标。