mgikit：用于 MGI fastq 文件的解复用工具包。

mgikit: demultiplexing toolkit for MGI fastq files.

机构信息

South Australian Genomics Centre, SAHMRI, Adelaide, SA, 5001, Australia.

Australian BioCommons, The University of Melbourne, Melbourne, VIC, 3010, Australia.

出版信息

Bioinformatics. 2024 Sep 2;40(9). doi: 10.1093/bioinformatics/btae554.

DOI:10.1093/bioinformatics/btae554

PMID:39259173

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11427695/

Abstract

SUMMARY

MGI sequencing is reported to be an inexpensive solution to obtain genomics information. There is a growing need for software and tools to analyse MGI's outputs efficiently. mgikit is a tool collection to demultiplex MGI fastq data, reformat it effectively and produce visual quality reports. mgikit overcomes several limitations of the standard MGI demultiplexer. It is highly customizable to suit different kinds of datasets and is designed to achieve high performance and optimal memory utilization.

AVAILABILITY AND IMPLEMENTATION

The tool and its documentation are available at: https://sagc-bioinformatics.github.io/mgikit/.

摘要

MGI 测序被认为是获取基因组学信息的一种廉价解决方案。人们越来越需要软件和工具来有效地分析 MGI 的输出。mgikit 是一个工具集合，用于对 MGI fastq 数据进行解复用、有效重格式，并生成可视化质量报告。mgikit 克服了标准 MGI 解复用器的几个限制。它可以高度定制，以适应不同类型的数据集，并旨在实现高性能和最佳内存利用。