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基于生物信息学分析探讨急性心肌梗死中细胞坏死和免疫浸润相关的潜在治疗靶点

Identification of potential therapeutic targets from bioinformatics analysis of necroptosis and immune infiltration in acute myocardial infarction.

机构信息

Department of Cardiovascular Surgery, Fujian Medical University Union Hospital, No. 29 Xinquan Road, Fuzhou, Fujian, 350001, China.

Key Laboratory of Cardio-Thoracic Surgery (Fujian Medical University), Fujian Province University, Fuzhou, Fujian, China.

出版信息

J Cardiothorac Surg. 2024 Sep 11;19(1):524. doi: 10.1186/s13019-024-03038-6.

Abstract

INTRODUCTION

Acute myocardial infarction (AMI) is a serious, deadly disease with a high incidence. However, it remains unclear how necroptosis affects the pathophysiology of AMI. Using bioinformatic analyses, this study investigated necroptosis in AMI.

METHODS

We obtained the GSE66360 dataset related to AMI by the GEO database. Venn diagrams were used to identify necroptosis-related differential genes (NRDEGs). The genes with differential expression in AMI were analyzed using gene set enrichment analysis, and a PPI network was established. A transcription factor prediction and enrichment analysis were conducted for the NRDEGs, and the relationships between AMI, NRDEGs, and immune cells were determined. Finally, in the additional dataset, NRDEG expression levels, immune infiltration, and ROC curve analysis were confirmed, and gene expression levels were further verified experimentally.

RESULTS

GSEA revealed that necroptosis pathways were significantly enriched in AMI. We identified 10 NRDEGs, including TNF, TLR4, FTH1 and so on. Enrichment analysis indicated that the NOD-like receptor and NF-kappa B signaling pathways were significantly enriched. Four NRDEGs, FTH1, IFNGR1, STAT3, and TLR4, were identified; however, additional datasets and further experimental validation are required to confirm their roles. In addition, we determined that a high abundance of macrophages and neutrophils prompted AMI development.

CONCLUSIONS

In this study, four potential genes that affect the development of AMI through necroptosis (FTH1, IFNGR1, STAT3, and TLR4) were identified. In addition, we found that a high abundance of macrophages and neutrophils affected AMI. This helps determine the pathological mechanism of necroptosis and immune cells that influence AMI and provides a novel strategy for targeted therapy.

摘要

简介

急性心肌梗死(AMI)是一种发病率高且严重致命的疾病。然而,目前尚不清楚坏死性凋亡如何影响 AMI 的病理生理学。本研究通过生物信息学分析探讨了坏死性凋亡在 AMI 中的作用。

方法

我们从 GEO 数据库中获得了与 AMI 相关的 GSE66360 数据集。使用 Venn 图来识别坏死性凋亡相关差异基因(NRDEGs)。使用基因集富集分析对 AMI 中差异表达的基因进行分析,并建立 PPI 网络。对 NRDEGs 进行转录因子预测和富集分析,确定 AMI、NRDEGs 和免疫细胞之间的关系。最后,在额外的数据集中,对 NRDEG 的表达水平、免疫浸润和 ROC 曲线分析进行了验证,并通过实验进一步验证了基因表达水平。

结果

GSEA 表明坏死性凋亡途径在 AMI 中显著富集。我们鉴定出 10 个 NRDEGs,包括 TNF、TLR4、FTH1 等。富集分析表明 NOD 样受体和 NF-kappa B 信号通路显著富集。鉴定出四个 NRDEGs,FTH1、IFNGR1、STAT3 和 TLR4,但需要额外的数据集和进一步的实验验证来确认它们的作用。此外,我们确定了大量的巨噬细胞和中性粒细胞促进了 AMI 的发展。

结论

本研究鉴定了四个通过坏死性凋亡影响 AMI 发展的潜在基因(FTH1、IFNGR1、STAT3 和 TLR4)。此外,我们发现大量的巨噬细胞和中性粒细胞影响 AMI。这有助于确定坏死性凋亡和影响 AMI 的免疫细胞的病理机制,并为靶向治疗提供了一种新策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/833a/11389343/d266ff41e070/13019_2024_3038_Fig1_HTML.jpg

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