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计算机模拟分析揭示了蒲公英赛醇()和环氧苦楝内酯-1()的α-淀粉酶抑制潜力:一种控制餐后高血糖诱导的内皮功能障碍和心血管事件的可能方法。

In silico analysis reveals α-amylase inhibitory potential of Taraxerol () and Epoxywithanolide-1 (): a possible way to control postprandial hyperglycemia-induced endothelial dysfunction and cardiovascular events.

作者信息

Ravi Lokesh, Sadhana Venkatesh, Jain Pratishtha, Godidhar Raghuram Shree Kumari, Vaithilingam Mohanasrinivasan, Manjunathan Reji, Krishnan Ajith Kumar, Kesavan Mookkandi Palsamy

机构信息

Department of Food Technology, Faculty of Life and Allied Health Sciences, MS Ramaiah University of Applied Sciences, Bengaluru, Karnataka 560054 India.

Department of Chemistry, Atria Institute of Technology, Bangalore, Karnataka 560024 India.

出版信息

In Silico Pharmacol. 2024 Sep 9;12(2):82. doi: 10.1007/s40203-024-00257-6. eCollection 2024.

Abstract

Postprandial hyperglycemia (PPG) exacerbates endothelial dysfunction and impairs vascular function in diabetes as well in healthy people. Though synthetic drugs are available to regulate PPG, the severe gastrointestinal side effects of those medications have prompted the search for alternative treatments. Recently, some phytochemicals captured the attention because of their inhibitory effects on α-amylase to control diabetes. The aim of this study was to investigate and identify potential alpha-amylase inhibitors in and . This study also aims to understand one of the possible mechanisms of action of plants for their anti-diabetic activity. A total of 36 phytochemical ligands were subjected for protein-ligand docking analysis. Among the phytochemicals, Taraxerol and Epoxywithanolide-I demonstrated significant binding free energy of - 10.2 kcal/mol and - 11.9 kcal/mol respectively, which was higher than the reference acarbose with - 8.6 kcal/mol. These molecules were subjected for molecular dynamics simulation (MDS) analysis with alpha-amylase protein for a duration of 150 ns. Among the three complexes, Taraxerol and Epoxywithanolide-I complexes demonstrates strong potential as inhibitors of the target protein. MDS results were analyzed via root mean square deviation (RMSD), fluctuation of residues, potential energy, radii of gyration and solvent access surface area analysis. Taraxerol demonstrated a significantly low potential energy of - 1,924,605.25 kJ/mol, and Epoxywithanolide-I demonstrated - 1,964,113.3 kJ/mol of potential energy. RMSD plot shows that Epoxywithanolide-I has much higher stability than the other MDS complexes. Drugability and toxicity studies show that the test ligands are demonstrating strong potential as drug like molecules. The results of the study conclude that, Taraxerol of and Epoxywithanolide-I of are strong inhibitors of alpha-amylase enzyme and that, this is one of the possible mechanisms of action of the plants for their reported anti-diabetic activities. Further analysis is in demand to prove the observed results.

摘要

餐后高血糖(PPG)会加剧糖尿病患者以及健康人群的内皮功能障碍并损害血管功能。尽管有合成药物可用于调节PPG,但这些药物严重的胃肠道副作用促使人们寻找替代治疗方法。最近,一些植物化学物质因其对α-淀粉酶的抑制作用以控制糖尿病而受到关注。本研究的目的是调查和鉴定[具体植物名称未给出]中的潜在α-淀粉酶抑制剂。本研究还旨在了解植物抗糖尿病活性的一种可能作用机制。总共36种植物化学配体进行了蛋白质-配体对接分析。在这些植物化学物质中,蒲公英赛醇和环氧苦楝内酯-I分别表现出显著的结合自由能-10.2千卡/摩尔和-11.9千卡/摩尔,高于参考药物阿卡波糖的-8.6千卡/摩尔。这些分子与α-淀粉酶蛋白进行了150纳秒的分子动力学模拟(MDS)分析。在这三种复合物中,蒲公英赛醇和环氧苦楝内酯-I复合物显示出作为靶蛋白抑制剂的强大潜力。通过均方根偏差(RMSD)、残基波动、势能、回转半径和溶剂可及表面积分析对MDS结果进行了分析。蒲公英赛醇表现出显著低的势能-1,924,605.25千焦/摩尔,环氧苦楝内酯-I表现出-1,964,113.3千焦/摩尔的势能。RMSD图显示环氧苦楝内酯-I比其他MDS复合物具有更高的稳定性。药物可及性和毒性研究表明,测试配体显示出作为类药物分子的强大潜力。研究结果得出结论,[具体植物名称未给出]中的蒲公英赛醇和[具体植物名称未给出]中的环氧苦楝内酯-I是α-淀粉酶的强效抑制剂,并且这是这些植物所报道的抗糖尿病活性的一种可能作用机制。需要进一步的[具体分析未给出]来证实观察到的结果。

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