Hendi Nagham Nafiz, Bengoechea-Alonso Maria Teresa, Ericsson Johan, Nemer Georges
Division of Biological and Biomedical Sciences, College of Health and Life Sciences, Hamad Bin Khalifa University, Doha, P.O. Box 34110, Qatar.
Division of Genomics and Translational Biomedicine, College of Health and Life Sciences, Hamad Bin Khalifa University, Doha, P.O. Box 34110, Qatar.
Heliyon. 2024 Aug 17;10(17):e36466. doi: 10.1016/j.heliyon.2024.e36466. eCollection 2024 Sep 15.
Vitamin D deficiency poses a widespread health challenge, shaped by environmental and genetic determinants. A recent discovery identified a genetic regulator, rs11542462, in the gene, though its biological implications remain largely unexplored. Our bioinformatic assessments revealed pronounced expression in skin keratinocytes and the analogous HaCaT human keratinocyte cell lines, prompting us to select the latter as an experimental model. Employing CRISPR/Cas9 gene-editing technology and multi-omics approach, we discovered that depleting showed a 1.6-fold disruption in steroid biosynthesis pathway (-value = 0.03), considerably affecting crucial vitamin D biosynthesis regulators. Notably, (-value = 2.17 × 10), (-value = 2.46 × 10), and (-value = 8.03 × 10) elevated by ∼2-3 fold, while (-value <2.2 × 10), (-value = 1.96 × 10), and (-value = 1.06 × 10) downregulated by ∼1.5-3 fold. These alterations resulted in accumulation of 7-dehydrocholesterol precursor and reduction of vitamin D production, as evidenced by the drug enrichment (-value = 4.39 × 10) and total vitamin D quantification (R = 0.935, -value = 0.0016) analyses. Our investigation unveils 's significance in vitamin D homeostasis, emphasizing the potential of precision medicine in addressing vitamin D deficiency through understanding its genetic basis.
维生素D缺乏构成了一项受环境和基因决定因素影响的广泛健康挑战。最近的一项发现确定了该基因中的一个基因调控因子rs11542462,不过其生物学意义在很大程度上仍未得到探索。我们的生物信息学评估显示,它在皮肤角质形成细胞和类似的HaCaT人角质形成细胞系中表达显著,这促使我们选择后者作为实验模型。利用CRISPR/Cas9基因编辑技术和多组学方法,我们发现敲除该基因显示类固醇生物合成途径出现了1.6倍的破坏(P值 = 0.03),对关键的维生素D生物合成调节因子产生了相当大的影响。值得注意的是,某些基因(P值 = 2.17 × 10等)升高了约2至3倍,而另一些基因(P值 < 2.2 × 10等)下调了约1.5至3倍。这些改变导致了7-脱氢胆固醇前体的积累和维生素D生成的减少,药物富集分析(P值 = 4.39 × 10)和总维生素D定量分析(R = 0.935,P值 = 0.0016)证明了这一点。我们的研究揭示了该基因在维生素D稳态中的重要性,强调了精准医学通过了解维生素D缺乏的遗传基础来解决这一问题的潜力。