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超氧阴离子对植物干细胞中DNA去甲基化的调控

Control of DNA demethylation by superoxide anion in plant stem cells.

作者信息

Wang Shiwen, Liu Min, Hu Dongping, Dong Zhicheng, Zhao Zhong

机构信息

Ministry of Education Key Laboratory for Cellular Dynamics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.

Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design, Guangzhou Key Laboratory of Crop Gene Editing, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, Guangzhou University, Guangzhou, China.

出版信息

Nat Chem Biol. 2025 Apr;21(4):567-576. doi: 10.1038/s41589-024-01737-8. Epub 2024 Sep 12.

DOI:10.1038/s41589-024-01737-8
PMID:39266722
Abstract

Superoxide anion is thought to be a natural by-product with strong oxidizing ability in all living organisms and was recently found to accumulate in plant meristems to maintain stem cells in the shoot and undifferentiated meristematic cells in the root. Here we show that the DNA demethylase repressor of silencing 1 (ROS1) is one of the direct targets of superoxide in stem cells. The Fe-S clusters in ROS1 are oxidized by superoxide to activate its DNA glycosylase/lyase activity. We demonstrate that superoxide extensively participates in the establishment of active DNA demethylation in the Arabidopsis genome and that ARABIDOPSIS RESPONSE REGULATOR 12 acts downstream of ROS1-mediated superoxide signaling to maintain stem cell fate. Our results provide a mechanistic framework for superoxide control of the stem cell niche and demonstrate how redox and DNA demethylation interact to define stem cell fate in plants.

摘要

超氧阴离子被认为是所有生物中具有强氧化能力的天然副产物,最近发现它在植物分生组织中积累,以维持茎尖的干细胞和根中未分化的分生细胞。在这里,我们表明沉默1的DNA去甲基化酶阻遏物(ROS1)是干细胞中超氧的直接靶点之一。ROS1中的铁硫簇被超氧氧化,以激活其DNA糖基化酶/裂解酶活性。我们证明超氧广泛参与拟南芥基因组中活性DNA去甲基化的建立,并且拟南芥响应调节因子12在ROS1介导的超氧信号下游起作用,以维持干细胞命运。我们的结果为超氧对干细胞微环境的控制提供了一个机制框架,并证明了氧化还原和DNA去甲基化如何相互作用来定义植物中的干细胞命运。

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Active DNA demethylation in plants: 20 years of discovery and beyond.植物中的活性 DNA 去甲基化:20 年的发现与超越。
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ROS1-mediated decrease in DNA methylation and increase in expression of defense genes and stress response genes in Arabidopsis thaliana due to abiotic stresses.由于非生物胁迫,ROS1 介导的拟南芥 DNA 甲基化减少和防御基因及应激反应基因表达增加。
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The DME demethylase regulates sporophyte gene expression, cell proliferation, differentiation, and meristem resurrection.DME 去甲基酶调控孢子体基因表达、细胞增殖、分化和分生组织复苏。
Proc Natl Acad Sci U S A. 2021 Jul 20;118(29). doi: 10.1073/pnas.2026806118.
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Integration of Transcriptional Repression and Polycomb-Mediated Silencing of in Floral Meristems.在花分生组织中,转录抑制与 Polycomb 介导的沉默的整合。
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ROS1-Dependent DNA Demethylation Is Required for ABA-Inducible Expression.ROS1 依赖性 DNA 去甲基化是 ABA 诱导表达所必需的。
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A gene expression map of shoot domains reveals regulatory mechanisms.茎域的基因表达图谱揭示了调控机制。
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Differential Diel Translation of Transcripts With Roles in the Transfer and Utilization of Iron-Sulfur Clusters in Arabidopsis.拟南芥中参与铁硫簇转运与利用的转录本的差异昼夜翻译
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