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低温下组蛋白乙酰化酶和去乙酰化酶抑制剂处理的 L. 基因家族的系统分析及生理特性

Systematic Analysis of the Gene Family and Physiological Characteristics of L. Treated with Histone Acetylase and Deacetylase Inhibitors under Low Temperature.

机构信息

State Key Laboratory of Arid Land Crop Science, College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.

出版信息

Int J Mol Sci. 2024 Aug 24;25(17):9200. doi: 10.3390/ijms25179200.

Abstract

L. is an important overwintering oilseed crop in Northwest China. Histone acetyltransferases (HATs) play an important role in epigenetic regulation, as well as the regulation of plant growth, development, and responses to abiotic stresses. To clarify the role of histone acetylation in the low-temperature response of L., we identified 29 genes in L. using bioinformatics tools. We also conducted a comprehensive analysis of the physicochemical properties, gene structure, chromosomal localization, conserved structural domains and motifs, -acting regulatory elements, and evolutionary relationships of these genes. Using transcriptome data, we analyzed the expression patterns of family members and predicted interactions between proteins; the results indicated that play an important role in the low-temperature response of L. HAT inhibitor (curcumin; CUR) and histone deacetylase inhibitor (Trichostatin A; TSA) were applied to four L. varieties varying in cold resistance under the same low-temperature conditions, and changes in the physiological indexes of these four varieties were analyzed. The inhibitor treatment attenuated the effect of low temperature on seed germination, and curcumin treatment was most effective, indicating that the germination period was primarily regulated by histone acetylase. Both inhibitor treatments increased the activity of protective enzymes and the content of osmoregulatory substances in plants, suggesting that histone acetylation and deacetylation play a significant role in the response of L. to low-temperature stress. The qRT-PCR analyses showed that the expression patterns of BrHATs were altered under different inhibitor treatments and low-temperature stress; meanwhile, we found three significantly differentially expressed genes. In sum, the process of histone acetylation is involved in the cold response and the BrHATs gene plays a role in the cold stress response.

摘要

亚麻是中国西北地区重要的越冬油料作物。组蛋白乙酰转移酶(HATs)在表观遗传调控以及植物生长、发育和对非生物胁迫的响应中起着重要作用。为了阐明组蛋白乙酰化在亚麻低温响应中的作用,我们使用生物信息学工具在亚麻中鉴定了 29 个基因。我们还对这些基因的理化性质、基因结构、染色体定位、保守结构域和基序、-作用调控元件以及进化关系进行了综合分析。利用转录组数据,我们分析了家族成员的表达模式,并预测了蛋白质之间的相互作用;结果表明,在亚麻的低温响应中发挥重要作用。在相同的低温条件下,将 HAT 抑制剂(姜黄素;CUR)和组蛋白去乙酰化酶抑制剂(曲古抑菌素 A;TSA)应用于 4 个抗寒性不同的亚麻品种,分析这 4 个品种的生理指标变化。抑制剂处理减弱了低温对种子萌发的影响,其中姜黄素处理效果最显著,表明种子萌发期主要受组蛋白乙酰转移酶调控。两种抑制剂处理均提高了植物保护酶的活性和渗透调节物质的含量,表明组蛋白乙酰化和去乙酰化在亚麻对低温胁迫的响应中起重要作用。qRT-PCR 分析表明,在不同抑制剂处理和低温胁迫下,BrHATs 的表达模式发生改变;同时,我们发现了 3 个差异显著表达的基因。综上所述,组蛋白乙酰化过程参与了低温响应,BrHATs 基因在冷胁迫响应中发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/833e/11395008/2860d3953d7b/ijms-25-09200-g001.jpg

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