Biswas Raju, Misra Arijit, Ghosh Sandip, Chakraborty Abhinaba, Mukherjee Puja, Dam Bomba
Microbiology Laboratory, Department of Botany (DST-FIST & UGC-DRS Funded), Institute of Science, Visva-Bharati (A Central University), Santiniketan, West Bengal 731235 India.
Indian J Microbiol. 2024 Sep;64(3):937-949. doi: 10.1007/s12088-023-01147-9. Epub 2023 Dec 14.
A Gram-negative, short-rod, non-motile, facultatively anaerobic, potassium-solubilizing bacterium MR1 (Mine Rhizosphere) was isolated from rhizospheric soil of an open-cast coal mine of Jharia, Jharkhand, India. Isolate MR1 can grow in a broad range of temperature, pH, and NaCl concentrations. The 16S rRNA gene sequence of the strain showed 99.24% similarity with LMG 5345. However, maximum-likelihood tree constructed using 16S rRNA gene sequence, multilocus sequence analysis using concatenated sequences of ten housekeeping genes, whole-genome based phylogenetic reconstruction, digital DNA-DNA hybridization, and average nucleotide identity (ANIm and ANIb) values indicated segregation of MR1 from its closest relatives. Fatty acid profile of MR1 also suggested the same, with clear variation in major and minor fatty acid contents, having C anteiso (10-Methyldodecanoic acid) as the unique one. Thus, considering all polyphasic data, strain MR1 (= MTCC 13265, where 'T' stands for Type strain) is presented as a novel species of the genus , for which the name sp. nov. is proposed.
The online version contains supplementary material available at 10.1007/s12088-023-01147-9.
从印度贾坎德邦贾里亚露天煤矿的根际土壤中分离出一株革兰氏阴性、短杆状、无运动性、兼性厌氧、解钾细菌MR1(矿根际)。分离株MR1能在广泛的温度、pH值和NaCl浓度范围内生长。该菌株的16S rRNA基因序列与LMG 5345的相似性为99.24%。然而,使用16S rRNA基因序列构建的最大似然树、使用十个管家基因的串联序列进行的多位点序列分析、基于全基因组的系统发育重建、数字DNA-DNA杂交以及平均核苷酸同一性(ANIm和ANIb)值表明MR1与其最亲近的亲缘种分离。MR1的脂肪酸谱也表明了这一点,主要和次要脂肪酸含量有明显差异,以C异anteiso(10-甲基十二烷酸)为独特脂肪酸。因此,综合所有多相数据,菌株MR1(=MTCC 13265,其中“T”代表模式菌株)被提出作为该属的一个新物种,命名为 sp. nov.。
在线版本包含可在10.1007/s12088-023-01147-9获取的补充材料。