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新种,一种具有促进植物生长特性的新菌株。

sp. nov., a novel strain with plant growth-promoting properties.

作者信息

Campillo-Brocal Jonatan C, Sánchez-García María, Malo-López-Román Jorge, Bernal-Soro Antonio, Sánchez-Amat Antonio

机构信息

Department of Genetics and Microbiology, Faculty of Biology, University of Murcia, Murcia 30100, Spain.

Probelte S.A.U., Pol. Ind. la Polvorista, C. Ulea, 22, Molina de Segura 30500, Murcia, Spain.

出版信息

Int J Syst Evol Microbiol. 2025 Apr;75(4). doi: 10.1099/ijsem.0.006764.

Abstract

A phosphate-solubilizing bacterial strain, designated C3, was isolated from the rhizosphere of sorghum. The taxonomic classification of this novel isolate was investigated by using a polyphasic approach. Cells of this strain were Gram-stain-negative, facultatively anaerobic and motile short rods with a polar flagellum. Phylogenetic analyses based on the 16S rRNA gene indicated that strain C3 showed high similarity (98.66%) to certain species, indicating that the isolate belongs to this genus. The genome of strain C3 was 5.05 Mb in size with a G+C content of 51.1 mol%. Whole-genome analysis revealed that the novel strain shared 21.60-27.10% digital DNA-DNA hybridization values and 78.35-83.87% average nucleotide identity with closely related species; both values below the accepted thresholds for defining a novel species. The predominant cellular fatty acids of strain C3 were C, summed feature 3 (C ω6c and/or C ω7c), summed feature 8 (C ω7c and/or C ω6c), summed feature 2 (C aldehyde and/or C 3OH and/or C iso I and/or an unidentified fatty acid of 10.9525 chain length) and C cyclo. Apart from the ability to solubilize phosphates, stain C3 exhibited other plant growth-promoting activities such as K, Ca and Si solubilization, and the production of indole-3-acetic acid (IAA) and siderophores. Several genes related to phosphate solubilization, siderophore biogenesis and IAA, cytokinin and gamma-aminobutyric acid production were identified in the C3 genome. Summarizing, based on phylogenetic, genomic, phenotypic and chemotaxonomic criteria, the isolate represents a novel species of the genus for which the name sp. nov. is proposed. The type strain is C3 (=CECT 31163=NCIMB 15596).

摘要

从高粱根际分离出一株解磷细菌菌株,命名为C3。采用多相分类法对这一新分离菌株进行了分类研究。该菌株细胞革兰氏染色阴性,兼性厌氧,具极生鞭毛,为能动短杆菌。基于16S rRNA基因的系统发育分析表明,菌株C3与某些物种具有高度相似性(98.66%),表明该分离株属于该属。菌株C3的基因组大小为5.05 Mb,G+C含量为51.1 mol%。全基因组分析显示,该新菌株与近缘物种的数字DNA-DNA杂交值为21.60 - 27.10%,平均核苷酸同一性为78.35 - 83.87%;这两个值均低于定义新物种的公认阈值。菌株C3的主要细胞脂肪酸为C、特征性总和3(C ω6c和/或C ω7c)、特征性总和8(C ω7c和/或C ω6c)、特征性总和2(C醛和/或C 3OH和/或C异I和/或链长为10.9525的未鉴定脂肪酸)和C环。除了解磷能力外,菌株C3还表现出其他促进植物生长的活性,如溶解钾、钙和硅,以及产生吲哚-3-乙酸(IAA)和铁载体。在C3基因组中鉴定出了几个与解磷、铁载体生物合成以及IAA、细胞分裂素和γ-氨基丁酸产生相关的基因。综上所述,基于系统发育、基因组、表型和化学分类标准,该分离株代表了该属的一个新物种,为此提出新物种名为 sp. nov.。模式菌株为C3(=CECT 31163=NCIMB 15596)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/64d7/12038178/03542c418827/ijsem-75-06764-g001.jpg

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