Lata Pushp, Bhargava Vatsal, Gupta Sonal, Singh Ajaib, Bala Kiran, Lal Rup
Department of Zoology, University of Delhi, Delhi, 110007 India.
Department of Zoology, Sri Venkateswara College, University of Delhi, Delhin, 110021 India.
Indian J Microbiol. 2024 Sep;64(3):859-866. doi: 10.1007/s12088-024-01315-5. Epub 2024 Jul 24.
SeqCode is a nomenclatural code for naming prokaryotes based on genetic information. With the majority of prokaryotes being inaccessible as pure cultures, they are not eligible for naming under the International Code of Nomenclature of Prokaryotes. To address this challenge, a new concept that is SeqCode, which assign names to prokaryotes on the basis of genome sequence, has been announced in 2022. The valid publication of names for prokaryotes based on isolated genome, metagenome-assembled genomes, or single-amplified genome sequences. It operates through a registration portal, SeqCode Registry, where metadata is linked to names and nomenclatural types. This code provides a framework for reproducible nomenclature for all prokaryotes, either culturable or not and facilitates communication across all microbiological disciplines. Additionally, the SeqCode includes provisions for updating and revising names as new data becomes available. By providing a standardized system for naming and classifying these microorganisms based on their genetic information, the SeqCode will facilitate the discovery, understanding and comparison of these microorganisms, helping us to understand their role in the environment and how they contribute to the functioning of the Earth.
序列编码(SeqCode)是一种基于遗传信息对原核生物进行命名的命名法规则。由于大多数原核生物无法作为纯培养物获取,它们不符合《原核生物命名国际准则》下的命名资格。为应对这一挑战,2022年宣布了一种新的概念——序列编码,它基于基因组序列为原核生物命名。基于分离基因组、宏基因组组装基因组或单扩增基因组序列对原核生物名称进行有效发表。它通过一个注册门户——序列编码注册中心运行,在那里元数据与名称和命名模式相关联。该编码为所有原核生物(无论是否可培养)提供了一个可重复命名的框架,并促进了所有微生物学科之间的交流。此外,序列编码还包括在有新数据可用时更新和修订名称的规定。通过基于遗传信息为这些微生物提供一个标准化的命名和分类系统,序列编码将促进对这些微生物的发现、理解和比较,帮助我们了解它们在环境中的作用以及它们如何对地球的运转做出贡献。