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全长GRB2的三个结构域对SOS1富含脯氨酸的基序和EGFR磷酸化位点的不同分子识别。

Different molecular recognition by three domains of the full-length GRB2 to SOS1 proline-rich motifs and EGFR phosphorylated sites.

作者信息

Tateno Keita, Ando Takami, Tabata Maako, Sugasawa Haruka, Hayashi Toshifumi, Yu Sangya, Pm Sayeesh, Inomata Kohsuke, Mikawa Tsutomu, Ito Yutaka, Ikeya Teppei

机构信息

Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University 1-1 Minamiosawa Hachioji Tokyo 192-0397 Japan

RIKEN Center for Biosystems Dynamics Research, RIKEN 1-7-22 Suehiro-Cho, Tsurumi-Ku Yokohama 230-0045 Japan.

出版信息

Chem Sci. 2024 Sep 12;15(38):15858-72. doi: 10.1039/d4sc02656j.

DOI:10.1039/d4sc02656j
PMID:39282643
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11391413/
Abstract

The adaptor protein human GRB2 plays crucial roles in mediating signal transduction from cell membrane receptors to RAS and its downstream proteins by recruiting SOS1. Recent studies have revealed that GRB2 also serves as a scaffold for liquid-liquid phase separation (LLPS) with SOS1 and transmembrane receptors, which is thought to regulate the magnitude of cell signalling pathways. In this study, we employed solution NMR spectroscopy to investigate the interactions of the full-length GRB2 with proline-rich motifs (PRMs) derived from ten potential GRB2-binding sites in SOS1, as well as a peptide from a phosphorylation site of EGFR. Our findings indicate that the binding affinity of the two SH3 domains of GRB2 for PRMs differs by a factor of ten to twenty, with the N-terminal SH3 domain (NSH3) exhibiting a markedly higher affinity. The interactions of PRMs with the SH3 domains affected not only the regions surrounding the PRM binding sites on the SH3 domains but also the linker area connecting the three domains and parts of the SH2 domain. Analysis of the interaction between the phosphorylated EGFR binding site and the SH2 domain revealed chemical shift perturbations in regions distal from the known binding site of SH2. Moreover, we observed that the inter-domain interactions of the two SH3 domains with the SH2 domain of GRB2 are asymmetric. These findings suggest that the local binding of PRMs and phosphorylated EGFR to GRB2 impacts the overall structure of the GRB2 molecule, including domain orientation and dimerisation, which may contribute to LLPS formation.

摘要

衔接蛋白人类GRB2通过招募SOS1在介导从细胞膜受体到RAS及其下游蛋白的信号转导中发挥关键作用。最近的研究表明,GRB2还作为与SOS1和跨膜受体进行液-液相分离(LLPS)的支架,这被认为可调节细胞信号通路的强度。在本研究中,我们采用溶液核磁共振光谱法研究全长GRB2与源自SOS1中十个潜在GRB2结合位点的富含脯氨酸基序(PRM)以及表皮生长因子受体(EGFR)磷酸化位点的一段肽之间的相互作用。我们的研究结果表明,GRB2的两个SH3结构域对PRM的结合亲和力相差10到20倍,其中N端SH3结构域(NSH3)表现出明显更高的亲和力。PRM与SH3结构域的相互作用不仅影响SH3结构域上PRM结合位点周围的区域,还影响连接三个结构域的连接区以及SH2结构域的部分区域。对磷酸化EGFR结合位点与SH2结构域之间相互作用的分析揭示了远离SH2已知结合位点区域的化学位移扰动。此外,我们观察到GRB2的两个SH3结构域与SH2结构域之间的结构域间相互作用是不对称的。这些发现表明,PRM和磷酸化EGFR与GRB2的局部结合会影响GRB2分子的整体结构,包括结构域方向和二聚化,这可能有助于LLPS的形成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/b6321c3c95cd/d4sc02656j-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/c4c34820de93/d4sc02656j-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/c1c0a98a29b9/d4sc02656j-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/ea362a886067/d4sc02656j-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/dd1791843911/d4sc02656j-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/b6321c3c95cd/d4sc02656j-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/c4c34820de93/d4sc02656j-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/c1c0a98a29b9/d4sc02656j-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/ea362a886067/d4sc02656j-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/dd1791843911/d4sc02656j-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c7/11445819/b6321c3c95cd/d4sc02656j-f6.jpg

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本文引用的文献

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Cooperativity boosts affinity and specificity of proteins with multiple RNA-binding domains.协同作用增强了具有多个RNA结合结构域的蛋白质的亲和力和特异性。
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GRB2 dimerization mediated by SH2 domain-swapping is critical for T cell signaling and cytokine production.
GRB2 二聚化通过 SH2 结构域交换介导,对于 T 细胞信号转导和细胞因子产生至关重要。
Sci Rep. 2023 Mar 2;13(1):3505. doi: 10.1038/s41598-023-30562-7.
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A two-component protein condensate of the EGFR cytoplasmic tail and Grb2 regulates Ras activation by SOS at the membrane.EGFR 胞质尾和 Grb2 的双组份蛋白凝聚物在膜上通过 SOS 调节 Ras 的激活。
Proc Natl Acad Sci U S A. 2022 May 10;119(19):e2122531119. doi: 10.1073/pnas.2122531119. Epub 2022 May 4.
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OpenCell: Endogenous tagging for the cartography of human cellular organization.OpenCell:用于人类细胞组织图谱绘制的内源性标记。
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