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通过计算机筛选和体外验证鉴定婴儿血管瘤的潜在治疗药物。

Identification of Potential Therapeutics for Infantile Hemangioma via in silico Investigation and in vitro Validation.

机构信息

Department of Hemangioma and Vascular Malformation, Plastic Surgery Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100144, People's Republic of China.

出版信息

Drug Des Devel Ther. 2024 Sep 12;18:4065-4088. doi: 10.2147/DDDT.S460575. eCollection 2024.

Abstract

INTRODUCTION

Infantile Hemangioma (IH) is a prevalent benign vascular tumor affecting approximately 5-10% of infants. Its underlying pathogenesis remains enigmatic, and current therapeutic approaches show limited effectiveness. Our study aimed to discover potential IH-associated therapeutics through a transcriptomic, computational drug repurposing methodology.

METHODS

Utilizing the IH-specific dataset GSE127487 from the Gene Expression Omnibus, we identified differentially expressed genes (DEGs) and conducted weighted gene coexpression network analysis (WGCNA). Subsequently, a protein-protein interaction (PPI) network was constructed to obtain the top 100 hub genes. Drug candidates were sourced from the Connectivity Map (CMap) and Comparative Toxicogenomics Database (CTD).

RESULTS

Our analysis revealed 1203 DEGs and a significant module of 1780 mRNAs strongly correlated with IH. These genes were primarily enriched in the , and signaling pathway. After creating a PPI network of overlapping genes, we filtered out the top 100 hub genes. Ultimately, 44 non-toxic drugs were identified through the CMap and CTD databases. Twelve molecular-targeting agents (belinostat, chir 99021, dasatinib, entinostat, panobinostat, sirolimus, sorafenib, sunitinib, thalidomide, U 0126, vorinostat, and wortmannin) may be potential candidates for IH therapy. Moreover, in vitro experiments demonstrated that entinostat, sorafenib, dasatinib, and sirolimus restricted the proliferation and migration and initiated apoptosis in HemEC cells, thereby underscoring their potential therapeutic value.

CONCLUSION

Our investigation revealed that the pathogenic mechanism underlying IH might be closely associated with the , and signaling pathways. Furthermore, we identified twelve molecular-targeting agents among the predicted drugs that show promise as therapeutic candidates for IH.

摘要

简介

婴儿血管瘤(IH)是一种常见的良性血管肿瘤,影响约 5-10%的婴儿。其潜在的发病机制仍然神秘莫测,目前的治疗方法效果有限。我们的研究旨在通过转录组学、计算药物再利用方法发现潜在的 IH 相关治疗方法。

方法

利用基因表达综合数据库(GEO)中的 IH 特异性数据集 GSE127487,我们确定了差异表达基因(DEGs)并进行了加权基因共表达网络分析(WGCNA)。随后,构建了蛋白质-蛋白质相互作用(PPI)网络以获得前 100 个枢纽基因。药物候选物来自连接图谱(CMap)和比较毒理学基因组学数据库(CTD)。

结果

我们的分析揭示了 1203 个 DEGs 和一个与 IH 强烈相关的 1780 个 mRNAs 的显著模块。这些基因主要富集在 PI3K-Akt、MAPK 和 NF-κB 信号通路中。在创建重叠基因的 PPI 网络后,我们筛选出前 100 个枢纽基因。最终,通过 CMap 和 CTD 数据库确定了 44 种非毒性药物。12 种分子靶向药物(贝林司他、chir99021、达沙替尼、恩替诺特、帕比司他、西罗莫司、索拉非尼、舒尼替尼、沙利度胺、U0126、伏立诺他和渥曼青霉素)可能是 IH 治疗的潜在候选药物。此外,体外实验表明,恩替诺特、索拉非尼、达沙替尼和西罗莫司限制了 HemEC 细胞的增殖和迁移,并启动了细胞凋亡,从而凸显了它们的潜在治疗价值。

结论

我们的研究表明,IH 的发病机制可能与 PI3K-Akt、MAPK 和 NF-κB 信号通路密切相关。此外,我们在预测的药物中确定了 12 种分子靶向药物,它们可能是 IH 的治疗候选药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2de/11404501/22090a7b450b/DDDT-18-4065-g0001.jpg

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