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Rvisdiff:一个用于差异表达交互式可视化的R包。

Rvisdiff: An R package for interactive visualization of differential expression.

作者信息

Barrios David, Prieto Carlos

机构信息

Bioinformatics Service, Nucleus, University of Salamanca, Salamanca, Spain.

出版信息

Front Bioinform. 2024 Sep 2;4:1349205. doi: 10.3389/fbinf.2024.1349205. eCollection 2024.

Abstract

Rvisdiff is an R/Bioconductor package that generates an interactive interface for the interpretation of differential expression results. It creates a local web page that enables the exploration of statistical analysis results through the generation of auto-analytical visualizations. Users can explore the differential expression results and the source expression data interactively in the same view. As input, the package supports the results of popular differential expression packages such as DESeq2, edgeR, and limma. As output, the package generates a local HTML page that can be easily viewed in a web browser. Rvisdiff is freely available at https://bioconductor.org/packages/Rvisdiff/.

摘要

Rvisdiff是一个R/Bioconductor软件包,它为差异表达结果的解释生成一个交互式界面。它创建一个本地网页,通过生成自动分析可视化来实现对统计分析结果的探索。用户可以在同一视图中交互式地探索差异表达结果和源表达数据。作为输入,该软件包支持DESeq2、edgeR和limma等流行差异表达软件包的结果。作为输出,该软件包生成一个本地HTML页面,可以在网络浏览器中轻松查看。Rvisdiff可在https://bioconductor.org/packages/Rvisdiff/免费获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba06/11402892/8b712a357024/fbinf-04-1349205-g001.jpg

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