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使用技术添加剂的无细胞蛋白质合成——扩展体外基因表达的参数空间

Cell-free protein synthesis with technical additives - expanding the parameter space of in vitro gene expression.

作者信息

Bartsch Tabea, Lütz Stephan, Rosenthal Katrin

机构信息

Department of Biochemical and Chemical Engineering, TU Dortmund University, Emil-Figge-Straße 66, 44227 Dortmund, Germany.

School of Science, Constructor University, Campus Ring 6, 28759 Bremen, Germany.

出版信息

Beilstein J Org Chem. 2024 Sep 4;20:2242-2253. doi: 10.3762/bjoc.20.192. eCollection 2024.

Abstract

Biocatalysis has established itself as a successful tool in organic synthesis. A particularly fast technique for screening enzymes is the in vitro expression or cell-free protein synthesis (CFPS). The system is based on the transcription and translation machinery of an extract-donating organism to which substrates such as nucleotides and amino acids, as well as energy molecules, salts, buffer, etc., are added. After successful protein synthesis, further substrates can be added for an enzyme activity assay. Although mimicking of cell-like conditions is an approach for optimization, the physical and chemical properties of CFPS are not well described yet. To date, standard conditions have mainly been used for CFPS, with little systematic testing of whether conditions closer to intracellular conditions in terms of viscosity, macromolecules, inorganic ions, osmolarity, or water content are advantageous. Also, very few non-physiological conditions have been tested to date that would expand the parameter space in which CFPS can be performed. In this study, the properties of an extract-based CFPS system are evaluated, and the parameter space is extended to high viscosities, concentrations of inorganic ion and osmolarity using ten different technical additives including organic solvents, polymers, and salts. It is shown that the synthesis of two model proteins, namely superfolder GFP (sfGFP) and the enzyme truncated human cyclic GMP-AMP synthase fused to sfGFP (tcGAS-sfGFP), is very robust against most of the tested additives.

摘要

生物催化已成为有机合成中一种成功的工具。一种特别快速的酶筛选技术是体外表达或无细胞蛋白质合成(CFPS)。该系统基于供体提取物生物体的转录和翻译机制,并向其中添加核苷酸和氨基酸等底物以及能量分子、盐、缓冲液等。蛋白质成功合成后,可添加其他底物进行酶活性测定。尽管模拟细胞样条件是一种优化方法,但CFPS的物理和化学性质尚未得到充分描述。迄今为止,CFPS主要使用标准条件,对于在粘度、大分子、无机离子、渗透压或含水量方面更接近细胞内条件是否有利,几乎没有进行系统测试。此外,迄今为止测试的非生理条件非常少,而这些条件可以扩展CFPS可运行的参数空间。在本研究中,评估了基于提取物的CFPS系统的性质,并使用包括有机溶剂、聚合物和盐在内的十种不同技术添加剂将参数空间扩展到高粘度、无机离子浓度和渗透压。结果表明,两种模型蛋白,即超级折叠绿色荧光蛋白(sfGFP)和与sfGFP融合的截短型人环磷酸鸟苷-腺苷合酶(tcGAS-sfGFP)的合成,对大多数测试添加剂具有很强的耐受性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93c0/11403795/21e95d877019/Beilstein_J_Org_Chem-20-2242-g002.jpg

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