不同细菌和真菌共培养物对木质纤维素的降解
Degradation of lignocellulose by different bacterial and fungal co-cultures.
作者信息
Detain Julian, Besaury Ludovic
机构信息
Université de Reims Champagne Ardennes, INRAE, FARE, UMR A 614, Chaire AFERE, 51097 Reims, France.
出版信息
Curr Res Microb Sci. 2024 Aug 30;7:100271. doi: 10.1016/j.crmicr.2024.100271. eCollection 2024.
Long seen as non-valorisable waste, agricultural co-products are increasingly used in biorefinery processes. Co-culture appears as new trend for to improve the degradation of lignocellulose and improve the production of bioproducts. The goal of the study was to setup inter-domain co-cultures with high capabilities of lignocellulose degradation using a pluridisciplinary approach combining bioinformatics, enzymology, transcriptomics. Different individual lignocellulolytic strains: QM6a and three bacteria ( A3(2), sp.XylPr11 and AraPr2 affiliated from different phyla) were used in that study . Synergic activities have been observed and quantified in co-culture conditions, particularly for xylanases and peroxidases activities. The enzymatic activities for the co-cultures in the most interesting co-culture () reached more up to 2 IU/mL and 430 IU/mL respectively for the xylanase and peroxidase. Furthermore, ATR-FTIR analysis showed a real impact of co-culture condition on the substrate compared to the monoculture specially for hemicellulose degradation. Transcriptomics of A3(2) either in mono or co-culture showed a relative similar pattern profile whatever the condition analysed with a specific overexpression of certain CAZyme genes involved in glycolysis due to the hydrolytic role played by the fungal partner. This work provided the proof of concept for technological feasibility, pertinence and usefulness of interdomain co-culture.
长期以来,农业副产品一直被视为无价值的废物,但如今它们在生物精炼过程中的应用越来越广泛。共培养作为一种新趋势,有助于提高木质纤维素的降解效率并增加生物产品的产量。本研究的目标是通过结合生物信息学、酶学和转录组学的多学科方法,建立具有高木质纤维素降解能力的跨域共培养体系。该研究使用了不同的木质纤维素分解菌株:QM6a和三种细菌(A3(2)、XylPr11菌和AraPr2菌,它们隶属于不同的门)。在共培养条件下观察并量化了协同活性,特别是木聚糖酶和过氧化物酶的活性。在最理想的共培养体系中,共培养物的木聚糖酶和过氧化物酶活性分别高达2 IU/mL和430 IU/mL。此外,衰减全反射傅里叶变换红外光谱(ATR-FTIR)分析表明,与单培养相比,共培养条件对底物有实际影响,特别是在半纤维素降解方面。对A3(2)在单培养和共培养条件下的转录组学分析表明,无论分析何种条件,其模式图谱相对相似,由于真菌伙伴发挥的水解作用,某些参与糖酵解的碳水化合物活性酶(CAZyme)基因会有特定的过表达。这项工作为跨域共培养的技术可行性、相关性和实用性提供了概念验证。