Université de Reims Champagne Ardenne, INRAE, FARE, UMR A 614, Chaire AFERE, 51097, Reims, France.
Mol Genet Genomics. 2023 Sep;298(5):1135-1154. doi: 10.1007/s00438-023-02045-x. Epub 2023 Jun 19.
The Acidobacteria phylum is a very abundant group (20-30% of microbial communities in soil ecosystems); however, little is known about these microorganisms and their ability to degrade the biomass and lignocellulose due to the difficulty of culturing them. We, therefore, bioinformatically studied the content of lignocellulolytic enzymes (total and predicted secreted enzymes) and secreted peptidases in an in silico library containing 41 Acidobacteria genomes. The results showed a high abundance and diversity of total and secreted Carbohydrate-Active enzymes (cazyme) families among the Acidobacteria compared to known previous degraders. Indeed, the relative abundance of cazymes in some genomes represented more than 6% of the gene coding proteins with at least 300 cazymes. The same observation was made with the predicted secreted peptidases with several families of secreted peptidases, which represented at least 1.5% of the gene coding proteins in several genomes. These results allowed us to highlight the lignocellulolytic potential of the Acidobacteria phylum in the degradation of lignocellulosic biomass, which could explain its high abundance in the environment.
酸杆菌门是一个非常丰富的群体(土壤生态系统中微生物群落的 20-30%);然而,由于培养它们的困难,人们对这些微生物及其降解生物质和木质纤维素的能力知之甚少。因此,我们通过生物信息学方法研究了一个包含 41 个酸杆菌基因组的虚拟文库中木质纤维素降解酶(总酶和预测分泌酶)和分泌肽酶的含量。结果表明,与已知的降解菌相比,酸杆菌中总酶和分泌酶的碳水化合物活性酶(CAZyme)家族的丰度和多样性都很高。事实上,一些基因组中 CAZyme 的相对丰度超过了编码蛋白的基因的 6%,其中至少有 300 个 CAZyme。同样,在一些基因组中,预测的分泌肽酶也有几个分泌肽酶家族,这些家族至少占编码蛋白基因的 1.5%。这些结果表明酸杆菌门在木质纤维素生物质的降解中具有很强的木质纤维素降解潜力,这可以解释其在环境中的高丰度。